BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351609
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25950.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1369 0.0
AT5G25960.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1053 0.0
> AT5G25950.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:9057793-9059963 REVERSE LENGTH=1538
Length=1538
Score = 1369 bits (741), Expect = 0.0
Identities = 1091/1258 (87%), Gaps = 32/1258 (3%)
Strand=Plus/Plus
Query 1 ATGAGATTGTTCTTAGTGTTTGCGATTCTGTGGGGCTTATTTTATAATGTAGCCTATGGG 60
|||||||| |||||| | |||| |||| |||| || | ||||| |||| ||| ||||||
Sbjct 161 ATGAGATTTTTCTTAATCTTTGTGATTTTGTGTGG--T-TTTTACAATGAAGCATATGGG 217
Query 61 AAAGGTTCTTTAGATATTGATATGAAACTGAAGGCTCTTAATAAGCCTGCGTTGAAGACC 120
||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 218 AAAGGTTCTTTAGATATTGATCTGAAATTGAAGGCTCTTAATAAACCTGCGTTGAAGACC 277
Query 121 ATCAAGAGCGAAGATGGAGATATAATAGATTGTATAGACATCTATAAACAACATGCCTTT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 278 ATCAAGAGCGAAGATGGAGATATAATAGATTGTATAGATATCTATAAACAACATGCCTTT 337
Query 181 GATCATCCGGCTTTAAGGAACCACAAAATTCAGATGAAACCAAGTATAG-AATTTGGTAC 239
|||||||| ||||||| ||||||||||||||||||||||| ||| | | ||||||||||
Sbjct 338 GATCATCCCGCTTTAAAAAACCACAAAATTCAGATGAAACCGAGTGT-GAAATTTGGTAC 396
Query 240 AAAGAAGACTACTATACCAAACAACGGTTCTTCTGAACTA-ATTACGTCTCAGATTTGGT 298
|||||||||||||||||||||||||||||||||||||| | || | |||||||||||||
Sbjct 397 AAAGAAGACTACTATACCAAACAACGGTTCTTCTGAAC-ACATAAAATCTCAGATTTGGT 455
Query 299 CCAAATCCGGAAACTGTCCCAA-AGGGACAATACCGGTTCGTAGAGTTAGTAGAGAAGAC 357
| ||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 456 CTAAATCCGGAAAATGT-CCAATGGGGACCATACCGGTTCGTAGAGTTAGTAGAGAAGAC 514
Query 358 ATAAGCAGAGCCTCTTCACCGTCTCATTTTGGGAGAAAAACTCCACACAGATATAGCTTT 417
||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||
Sbjct 515 ATAAGCAGAGCCTCTTCACCGTCTCATTTTGGGAGGAAAACTCCTCACAAATACAGCTTT 574
Query 418 CTCGACAAGGCACTTCAACACAAGGGTAATTTCAATATAACAGCTGAAAAAATAA-CTCA 476
|| ||||| ||||||||||| ||||||||||||||||||||| ||| |||||||| | |
Sbjct 575 CTAGACAACGCACTTCAACATAAGGGTAATTTCAATATAACACCTGCAAAAATAAACGAA 634
Query 477 TGCCCGCCCAAAGCTTC-GATCGGAGGCAGTCCTTATCGCCTTAGGGTTTAATTTTATTG 535
|||| |||| | || ||||||||||| | || | ||| ||||||| |||||| | |
Sbjct 635 -GCCCAACCAAGG-TTAAGATCGGAGGCATTTATTGTGGCCCTAGGGTTCAATTTTGTCG 692
Query 536 GAGCTCAATCCGATATAAATGTATGGAACCCTCCGAGGGTTCAGGCTAGCGATTACAGCT 595
|||||||||| ||||||||| | |||||||||||||||||| | |||| ||| ||||| |
Sbjct 693 GAGCTCAATCTGATATAAATATTTGGAACCCTCCGAGGGTTGAAGCTACCGACTACAG-T 751
Query 596 -CTGCTCAGATATGGCTTCTTGGTGGCCTCTCAGATACTTTTGAAAGCATAGAAGCTGGT 654
|||| ||||| ||||| ||||||| |||||||| | |||||| ||| | |||| ||||
Sbjct 752 ACTGCCCAGATCTGGCTGGTTGGTGGTCTCTCAGAGAATTTTGAGAGCGTTGAAGGTGGT 811
Query 655 TGGGCGGTGAATCCACGC-GTTTTCGGAGACTCCCGCACACGTCTCTTCA-CTTATTGGA 712
||| |||||||||| || |||||||||||||| || || |||||||||| || | |||
Sbjct 812 TGGATGGTGAATCCA-GCTGTTTTCGGAGACTCACGTACCCGTCTCTTCATCTCCT-GGA 869
Query 713 CTAAAGATGGATACACTAAAACAGGGTGCGTCAACCTCTTATGCGCGGGTTTTGTGCAAA 772
||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 870 CTACAGATGGATACACTAAAACAGGGTGCATCAATCTCTTATGCGCGGGTTTTGTGCAAA 929
Query 773 CAACTACTAAGTTAGCC-TTGGGTGCAGCAATAGAACCTGTTTCGACTACCTCGCAAAAA 831
||| || || || ||| |||| |||| | | ||||||||||||| | |||| | |
Sbjct 930 CAAGTAAAAAATTTGCCCTTGG-TGCAACCGTTGAACCTGTTTCGAGTTCCTCT-AGTAC 987
Query 832 -CAACATTACATCACCGTCAGCATGTTC-TTGGATCCAAACAGCGGGAATTGGTGGTTGA 889
||| || |||||||||| ||||| ||| ||| |||||||||| ||||| ||||||||||
Sbjct 988 GCAATATCACATCACCGTTAGCATATTCCTTG-ATCCAAACAGTGGGAACTGGTGGTTGA 1046
Query 890 CTTGTGCAAAA-AACGTAATAGGTTATTGGCCGGGGACACTCTTCACCTACCTTAAACAT 948
|||| | |||| ||||| | |||||||||||||| ||||| |||| |||||| |||||
Sbjct 1047 CTTGCG-AAAACAACGTGTTGGGTTATTGGCCGGGTACACTATTCAACTACCTAAAACAC 1105
Query 949 AGCGCAACCGCTGTGCAGTGGGGTGGAGAAGTGCATAGCCCTAACGTGGG---GAAGAAG 1005
||||| || ||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 1106 AGCGCCACAGCTGTGCAGTGGGGTGGAGAAGTACATAGCCCTAACGTAGTATTGAAGAAG 1165
Query 1006 CCACATACGAGAACTTCAATGGGGAGTGGACAATGGGCATCTTACCTCTGGGCCCAAGCT 1065
||||| |||| ||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1166 CCACACACGACAACCGCAATGGGGAGTGGACAATGGGCATCTTACATCTGGGCCGAAGCT 1225
Query 1066 TGTTACCACACCAACATTAGGATCAAGGACTATTCCATGCAGATCAAATATCCCACA-TA 1124
|||| |||||| ||| |||||||||||||||||||||||||| ||||||| ||| || |
Sbjct 1226 TGTTTCCACACAAACCTTAGGATCAAGGACTATTCCATGCAGCTCAAATACCCC-CAGTT 1284
Query 1125 TCTCTCCGAGTACGCTGATGAGTACGACTGTTATTCGACAAAGCTCCACCGGAAAACATA 1184
||| |||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 1285 TCTATCCGAGTATGCTGATGAGTACAACTGTTATTCTACACTGCTCCACCGGAAAACATA 1344
Query 1185 TATGTCAGAGCCCCATTTTTACTTTGGAGGACCTGGCCAAAATTCTCGTTGTCCTTAA 1242
||||||||||||||| |||||||| ||||||||||||| || |||||||||||||||
Sbjct 1345 TATGTCAGAGCCCCACTTTTACTTCGGAGGACCTGGCCGGAACTCTCGTTGTCCTTAA 1402
> AT5G25960.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:9062917-9065011 REVERSE LENGTH=1059
Length=1059
Score = 1053 bits (570), Expect = 0.0
Identities = 690/746 (92%), Gaps = 15/746 (2%)
Strand=Plus/Plus
Query 497 CGGAGGCAGTCCTTATCGCCTTAGGGTTTAATTTTATTGGAGCTCAATCCGATATAAATG 556
||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 329 CGGAGGCTGTCCTTATGGCCTTAGGGTATAATTTTATTGGAGCTCAATCCGATATAAATG 388
Query 557 TATGGAACCCTCCGAGGGTTCAGGCTAGCGATTACAGCTCTGCTCAGATATGGCTTCTTG 616
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 389 TATGGAACCCTCCGAGGGTTCAGGCTAGCGACTACAGCTCTGCTCAGATATGGCTGCTTG 448
Query 617 GTGGCCTCTCAGATACTTTTGAAAGCATAGAAGCTGGTTGGGCGGTGAATCCACGCGTTT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 449 GTGGCCTCTCAGATACTTTTGAAAGCATAGAAGCTGGTTGGGCGGTGAATCCAAGTGTTT 508
Query 677 TCGGAGACTCCCGCACACGTCTCTTCACTTATTGGACTAAAGATGGATACACTAAAACAG 736
|||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |
Sbjct 509 TCGGAGACTCCCGCACACGTCTTTTCACATATTGGACTAAAGATGGATACTCTAAAACGG 568
Query 737 GGTGCGTCAACCTCTTATGCGCGGGTTTTGTGCAAACAACTACTAAGTTAGCCTTGGGTG 796
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 569 GGTGCGTCAACCTCTTATGCGCAGGTTTTGTGCAAACAACTACTAAGTTTGCATTGGGTG 628
Query 797 CAGCAATAGAACCTGTTTCGACTACCTCGCAAAAACAACATTACATCACCGTCAGCATGT 856
||||||||||||| |||||||||||||||||||||||||||| |||||||| | |
Sbjct 629 CAGCAATAGAACCCGTTTCGACTACCTCGCAAAAACAACATTTCATCACCG--A---T-- 681
Query 857 TCTTGGATCCAAACAGCGGGAATTGGTGGTTGACTTGTGCAAAAAACGTAATAGGTTATT 916
| |||| ||||||||||||||||||||| ||||| || ||||| ||||||||||
Sbjct 682 ------A-CCAA-CAGCGGGAATTGGTGGTTGACATGTGCTAACAACGTGATAGGTTATT 733
Query 917 GGCCGGGGACACTCTTCACCTACCTTAAACATAGCGCAACCGCTGTGCAGTGGGGTGGAG 976
||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 734 GGCCGGGGACACTCTTCGCCTACCTCAAACATAGCGCAACCGCTGTGCAGTGTGGTGGAG 793
Query 977 AAGTGCATAGCCCTAACGTGGGGAAGAAGCCACATACGAGAACTTCAATGGGGAGTGGAC 1036
|||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 794 AAGTACATAGCCCAAACGTGGGGAAGAAGCCACATACAAGAACTTCAATGGGGAGTGGGC 853
Query 1037 AATGGGCATCTTACCTCTGGGCCCAAGCTTGTTACCACACCAACATTAGGATCAAGGACT 1096
||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 854 AATGGGCCTCTTACCTCTGGGCTCAAGCTTGTTACCACAGCAACATTAGAATCAAGGACT 913
Query 1097 ATTCCATGCAGATCAAATATCCCACATATCTCTCCGAGTACGCTGATGAGTACGACTGTT 1156
||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||
Sbjct 914 ATTCCTTGCAGATCAAATACCCCAAATATCTGTCCGAGTACGCTGATGAGTACGAGTGTT 973
Query 1157 ATTCGACAAAGCTCCACCGGAAAACATATATGTCAGAGCCCCATTTTTACTTTGGAGGAC 1216
|||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 974 ATTCTACAAAGCTCCACCGGAAAACATACATGTCAGAGCCCTACTTTTACTTTGGAGGAC 1033
Query 1217 CTGGCCAAAATTCTCGTTGTCCTTAA 1242
||||||| ||||||||||||||||||
Sbjct 1034 CTGGCCAGAATTCTCGTTGTCCTTAA 1059
Score = 453 bits (245), Expect = 2e-126
Identities = 305/334 (91%), Gaps = 3/334 (1%)
Strand=Plus/Plus
Query 1 ATGAGATTGTTCTTAGTGTTTGCGATTCTGTGGGGCTTATTTTATAATGTAGCCTATGGG 60
||||||||||||||| | |||||||||||||| || | ||||| |||| ||||||||||
Sbjct 1 ATGAGATTGTTCTTAATATTTGCGATTCTGTGTGG--T-TTTTACAATGAAGCCTATGGG 57
Query 61 AAAGGTTCTTTAGATATTGATATGAAACTGAAGGCTCTTAATAAGCCTGCGTTGAAGACC 120
||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||
Sbjct 58 AAAGGTTCTTTAGATATCGATATGAAACTGAAGTCTCTTAATAAGCCTTCCTTGAAGACC 117
Query 121 ATCAAGAGCGAAGATGGAGATATAATAGATTGTATAGACATCTATAAACAACATGCCTTT 180
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 118 ATCAAGAGCGAAGATGGAGATATAATAGATTGTATAGATATCTACAAACAACATGCCTTT 177
Query 181 GATCATCCGGCTTTAAGGAACCACAAAATTCAGATGAAACCAAGTATAGAATTTGGTACA 240
|||||||| ||||||||||||||||| |||||||||||||| || | || |||||||||
Sbjct 178 GATCATCCCGCTTTAAGGAACCACAAGATTCAGATGAAACCGAGCGTGGACTTTGGTACA 237
Query 241 AAGAAGACTACTATACCAAACAACGGTTCTTCTGAACTAATTACGTCTCAGATTTGGTCC 300
||||| |||||||| ||||||||||||||||| |||| ||| |||||||| ||||||||
Sbjct 238 AAGAAAACTACTATTCCAAACAACGGTTCTTCGGAACAAATAACGTCTCAAATTTGGTCT 297
Query 301 AAATCCGGAAACTGTCCCAAAGGGACAATACCGG 334
||||||||||| ||||||||||||||||||||||
Sbjct 298 AAATCCGGAAATTGTCCCAAAGGGACAATACCGG 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5