BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351610
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25970.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1729 0.0
AT5G11730.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 787 0.0
AT5G25990.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 134 2e-30
> AT5G25970.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:9066377-9067974
FORWARD LENGTH=1417
Length=1417
Score = 1729 bits (936), Expect = 0.0
Identities = 1085/1158 (94%), Gaps = 6/1158 (1%)
Strand=Plus/Plus
Query 7 AGTAGGGTTGTTCAGTTGGAAGAAGGTAAAGATATTGTAGTTACGGGCGGCCGGACCGGG 66
||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 263 AGTAGGGTTCTTCAGTTGGAAGAAGGTAAAGAGATTGTAGTTACAAGCAGCCGGACCGGG 322
Query 67 CTAAATAAGGCGTTTCCTTTCAAGTTACTTCTCTTGCTAGGATTTTTTCTAGCTTTTACT 126
|| | |||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 323 CTTACTAAGGCGTTTCCTTACAAGTTGCTTCTCTTGCTAGGTTTTTTTCTAGCTTTTACT 382
Query 127 GTTGTTTTATTCTTCATTAGTGTATCCA-CATTCAAGTTTTATGGAATCAATAGTGTAGT 185
|||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 383 GTTGTTTTATTCTTCATTAGTGTATCCACCA-TCAAGTATTATGGAATCAATAGTGTAGT 441
Query 186 GACTTCAGTCACGTCTAGTTTTGTGCCTTGCCACGAGAAAAGAAACGATCTTCATAAATG 245
|||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||
Sbjct 442 GACTTCAGTCACTTCTAGTTTTGTGCCTTGCCACGAGAAAATAAATGATCTTGATAAATG 501
Query 246 GATTGAACCTCCTATGGTTCTCATGCATAATATGAGCGATGAAGAACTTCTTTGGCGTGC 305
||| |||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 502 GATCAAACCTCTTGTGGTTCTCATGCATAATATGAGCGATGAAGAGCTTCTTTGGGGTGC 561
Query 306 GTCTTTCATGCCTAAGACGAAAGAGTTTCCGTTTAATAGGGTGCCGAAAATCGCGTTTAT 365
|||||||||||| || |||||||| ||||||||| |||| || ||||||||||||||
Sbjct 562 ATCTTTCATGCCTCGGAGGAAAGAGTACCCGTTTAATCGGGTCCCTAAAATCGCGTTTAT 621
Query 366 GTTCTTGACAATGGGTCCTTTGCCGCTTGCACCGCTTTGGGAAAGGTTATTAAAGGGTCA 425
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 622 GTTCTTGACAATGGGTCCTTTGCCTCTTGCACCGCTTTGGGAGAGGTTATTAAAGGGTCA 681
Query 426 TGAGAAGCATTATTCAGTTTACATCCATTCACCAGTATCTTCTTCAGCCAAGTTTCAAGC 485
|||||||| ||| |||||||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct 682 TGAGAAGCTTTACTCAGTTTATATCCATTCACCTGTATCTTCTTCAGCTAAGTTTCCAGC 741
Query 486 TTCCTCTGTTTTCTACCGTAGGCATATACCAAGTCAGGTTGCAGAATGGGGAAGAATGAC 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TTCCTCTGTTTTCTACCGTAGGCATATACCAAGTCAGGTTGCAGAATGGGGAAGAATGAC 801
Query 546 AATGTGCGATGCAGAGAGGCGGCTTCTTGCCAATGCGCTACTCGATATCTCAAACGAATG 605
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 802 AATGTGCGATGCAGAGAGGCGGCTTCTTGCAAATGCGCTACTCGATATCTCAAACGAATG 861
Query 606 GTTTGTTCTCCTCTCCGAGTCATGCATTCCCCTCTTCAACTTCACAACTATCTACACTTA 665
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 862 GTTTGTTCTCCTCTCCGAGTCATGCATTCCCCTATTCAACTTCACAACTATCTACACGTA 921
Query 666 CATAACCAAATCAAAGCACAGCTTTATGGGTTCATTTGATGATCCTAGTCCATATGGCCG 725
||| ||||||||| |||| ||||||||||||||||||||||||||| || |||||||| |
Sbjct 922 CATGACCAAATCAGAGCATAGCTTTATGGGTTCATTTGATGATCCTGGTGCATATGGCAG 981
Query 726 AGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTCCATAGACCAATGGAGAAAAGGGTC 785
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 982 AGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTTCATAGACCAATGGAGAAAAGGGTC 1041
Query 786 TCAATGGTTTGAGGTTAACCGGGAGCTTGCAGTTTCCATTGTCAAAGATACCTTGTATTA 845
||||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1042 TCAATGGTTTGAGATTAACCGGGAGCTTGCGGTTTCCATTGTCAAAGATACATTATATTA 1101
Query 846 CCCTAAATTCAAACAGTTTTGTAAACCTGCTTGTTACGTGGACGAGCATTATTTCCCAAC 905
||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1102 CCCTAAATTCAAAGAGTTTTGTCAACCTGCTTGTTATGTGGACGAGCATTATTTCCCAAC 1161
Query 906 AATGTTGACAATTGAGAAACCGGCGGCCTTGGCCAACCGAAGTGTGACTTGGGTCGACTG 965
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1162 AATGTTGACAATTGAGAAACCGGCCGCCTTGGCTAACCGAAGTGTGACTTGGGTCGACTG 1221
Query 966 GTCGAGAGGTGGTGCCCACCCAGCTACATTTGGAGCACAAGACATCAGTGAGGAGTTCTT 1025
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1222 GTCGAGAGGTGGTGCCCACCCAGCTACATTTGGAGCACAAGACATCAATGAGGAGTTCTT 1281
Query 1026 TGC-ATGGGTTCTCAAAGGTGATAACTGCACTTACAATGGTGGCTACACATCCATGTGTT 1084
||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1282 TGCCA-GAATTCTCAAAGGTGACAACTGCACTTACAATGGTGGCTACACATCCATGTGTT 1340
Query 1085 ATCTCTTTGCTAGAAAGTTTTCTCCGAGTGCTTTAGAGCCTTTGATTCAAATTGCTCCCA 1144
||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||
Sbjct 1341 ATCTCTTTGCTAGAAAGTTTTCTCCTAGTGCTTTGGAGCCTTTGGTTCAAATTGCACCCA 1400
Query 1145 AGA-TTCTGAGTTTTTGA 1161
| | || |||||| ||||
Sbjct 1401 A-ACTTTTGAGTTCTTGA 1417
> AT5G11730.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:3780311-3782713
FORWARD LENGTH=2053
Length=2053
Score = 787 bits (426), Expect = 0.0
Identities = 877/1089 (81%), Gaps = 53/1089 (5%)
Strand=Plus/Plus
Query 101 TGCTAGGATTTTTTC-TAGC-TTTTACTGTTGTTTTATTCTTCATTAGTGTATCCACAT- 157
||||||| || |||| || | |||| ||||| | | ||| ||||||||||||| || |
Sbjct 750 TGCTAGGGTTGTTTCTTA-CATTTT-CTGTTACTGTCTTCATCATTAGTGTATCTAC-TA 806
Query 158 TCAAGTTTTA-TGGAAT-CAATAGTGTAGTGACTTCAGTCACGTCTAGTTTTGTGCCTTG 215
||||| | || |||||| ||| |||||||| || ||||||| || || |||||||| ||
Sbjct 807 TCAAG-TATACTGGAATACAA-AGTGTAGTAACCACAGTCACTTCAAGCTTTGTGCCATG 864
Query 216 CCACGAGAAAAGAAACG-AT--CTTCA-TAAATGGATTGAACCTCCTATGGTTCTCATGC 271
|| ||| ||| || || || | ||||||||| |||||||| |||| | ||||
Sbjct 865 CCGTGAG-GGGGAACCGAATAGTTTGAGTAAATGGATACAACCTCCTGCGGTTTTGATGC 923
Query 272 ATAATATGAGCGATGAAGAACTTCTTTGGCGTGCGTCTTTCAT-GCCTAAG-ACG-AAAG 328
|||| |||||||||||||| |||||||||||||| ||||| | |||| | | | ||||
Sbjct 924 ATAACATGAGCGATGAAGAGCTTCTTTGGCGTGCTTCTTT-TTGGCCT-CGTA-GAAAAG 980
Query 329 AGTTTCCGTTTAATA-GGGTGCCGAAA-ATCGCGTTTATGTTCTTGAC-AATGGGTCCTT 385
| | ||||||||| | |||| || ||| | ||||||||||||||||| || || || |
Sbjct 981 AATATCCGTTTAA-ACGGGTTCC-AAAGGTTGCGTTTATGTTCTTGACTAA-AGGCCCCT 1037
Query 386 TGCCGCTTGCACCGCTTTGGGAAAGGTTATTAAAGGGTCATGAGAA--GCATTATTCAGT 443
| |||||||| |||||||||| ||||| || |||||||| | || || ||| || ||
Sbjct 1038 TACCGCTTGCTTCGCTTTGGGAGAGGTTCTTGAAGGGTCA-CA-AAGGGCTTTACTCGGT 1095
Query 444 TTACATCCATTCAC-CAGTATCTTCTT-CAGCCAAGTTTCAAGCTTCCTCTGTTTTCTAC 501
|||| | ||| ||| | | |||| || |||||||||||| |||| |||||||||| ||
Sbjct 1096 TTACCTTCATCCACACCCT-TCTT-TTACAGCCAAGTTTCCAGCTAGCTCTGTTTTCCAC 1153
Query 502 CGTAGGCATATACCAAGTCAGGTTGCAGAATGGGGAAGAATGACAATGTGCGATGCAGAG 561
|| ||||| || ||||| ||||||||||||||||| |||||| | |||||||||||||||
Sbjct 1154 CGGAGGCAAATTCCAAGCCAGGTTGCAGAATGGGGGAGAATGTCCATGTGCGATGCAGAG 1213
Query 562 AGGCGGCTTCTTGCCAATGCGCTACTCGATATCTCAAACGAATGGTTTGTTCTCCTCTCC 621
| ||||||||||||||| || || || ||| | || |||||||||||||||||| ||||
Sbjct 1214 AAGCGGCTTCTTGCCAACGCCCTGCTTGATGTGTCCAACGAATGGTTTGTTCTCGTCTCA 1273
Query 622 GAGTCATGCATTCCCCTCTTCAACTTCACAACTATCTACA-CTTACATAA-CCAAATCAA 679
|||||||||||||| |||| |||||||||||| || |||| | ||| ||| || |||||
Sbjct 1274 GAGTCATGCATTCCACTCTACAACTTCACAACCATTTACAGC-TACTTAAGCC-GATCAA 1331
Query 680 AGCACAGCTTTATGGGTTCATTTGATGATCCTAGTCCATATGGCCGAGGCCGCTACCACG 739
| |||||||| |||||| | |||||||| ||| | || | ||| || ||||||||| |||
Sbjct 1332 AACACAGCTTCATGGGTGCTTTTGATGACCCTGGACCGTTTGGGCGTGGCCGCTACAACG 1391
Query 740 GCAACATGGCCCCTGAAGTTTCCATAGACC-AATGGAGAAAAGGGTCTCAATGGTTTGAG 798
| ||||||| ||||||||| || | ||| ||||| |||||||||||||||||||||||
Sbjct 1392 GGAACATGGAACCTGAAGTTCCCCT-TACCAAATGGCGAAAAGGGTCTCAATGGTTTGAG 1450
Query 799 GTTAACCGGGAGCTTGCAGTTTCCATTGTCAAAGATACCTTGTATTACCCTAAATTCAAA 858
||||||||||| || |||| | ||||||||||||| || ||||||||||| |||||||||
Sbjct 1451 GTTAACCGGGACCTGGCAGCTACCATTGTCAAAGACACATTGTATTACCCGAAATTCAAA 1510
Query 859 CAGTTTTGTAAACCTGCTTGTTACGTGGACGAGCATTATTTCCCAACAATGTTGACAATT 918
|||| || | |||||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct 1511 GAGTTCTGCAGGCCTGCTTGCTATGTGGACGAGCATTACTTCCCAACAATGTTGACGATT 1570
Query 919 GAGAAACCGGCGGCCTTGGCCAACCGAAG-TGTGACTTGGGTCGACTGGTCGAGAGGTGG 977
|||||||| | | |||||| ||||| || | |||| ||||| ||||||||||| || ||
Sbjct 1571 GAGAAACCAACAGTCTTGGCTAACCGGAGCT-TGACATGGGTGGACTGGTCGAGGGGCGG 1629
Query 978 TGCCCACCCAGCTACATTTGGAGC-A-CAAGACATCAGTGAGGAGTTCTTTGCATGGGT- 1034
| ||||||||||||| ||||| || | | ||||| | || | ||||||| | |
Sbjct 1630 TCCCCACCCAGCTACGTTTGG-GCGATCG-GACATTACAGAAAACTTCTTTGGAAAAATC 1687
Query 1035 TCTCAAAGGT-GATAACTGCACTTACAATGGTGGCTACACATCCATGTGTTATCTCTTTG 1093
| | | || || ||||||| |||||||||| || |||| |||||||||||||||||||
Sbjct 1688 TTTGAT-GGAAGA-AACTGCAGTTACAATGGTCGCAACACTTCCATGTGTTATCTCTTTG 1745
Query 1094 CTAGAAAGTTTTCTCCGAGTGCTTTAGAGCCTTTGATTCAAATTGCTCCCAAGATTCT-G 1152
| || |||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| |
Sbjct 1746 CGAGGAAGTTTGCTCCGAGTGCTTTGGAGCCTTTGCTTCACATTGCTCCCAAGATTCTTG 1805
Query 1153 AGTTTTTGA 1161
| ||||||
Sbjct 1806 -GATTTTGA 1813
> AT5G25990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is: Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family
protein (TAIR:AT5G25970.1); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa -
736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:9076107-9077379 REVERSE
LENGTH=306
Length=306
Score = 134 bits (72), Expect = 2e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 718 TATGGCCGAGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTCCATAGACCAATGGAGA 777
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TATGGCCGAGGCCGCTACTACGGCAACATGGCCCCTGAAGTTTCCATAGACCAATGGAGA 285
Query 778 AAAGGGTCTCAATGGTTT 795
||||||||||| ||||||
Sbjct 286 AAAGGGTCTCAGTGGTTT 303
Score = 56.5 bits (30), Expect = 6e-07
Identities = 35/37 (95%), Gaps = 1/37 (3%)
Strand=Plus/Plus
Query 570 TCT-TGCCAATGCGCTACTCGATATCTCAAACGAATG 605
||| |||| ||||||||||||||||||||||||||||
Sbjct 185 TCTATGCCTATGCGCTACTCGATATCTCAAACGAATG 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5