BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351629
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26170.1 | Symbols: WRKY50, ATWRKY50 | WRKY DNA-binding prot... 765 0.0
> AT5G26170.1 | Symbols: WRKY50, ATWRKY50 | WRKY DNA-binding protein
50 | chr5:9147176-9148128 REVERSE LENGTH=522
Length=522
Score = 765 bits (414), Expect = 0.0
Identities = 488/524 (93%), Gaps = 4/524 (1%)
Strand=Plus/Plus
Query 1 ATGAATGGA-GCAGAGACAAACTTGGCGAGGAGTTTCAGCGATGATACTCACTCAG-GAT 58
|||||| || ||||| |||||||||| ||| ||||||||||||||||||||||| | | |
Sbjct 1 ATGAAT-GATGCAGACACAAACTTGGGGAGTAGTTTCAGCGATGATACTCACTCTGTG-T 58
Query 59 TGGAGTTTCCGGAGCTAGACTTGTCAGATGAATGGATGGATGATGATCTTGTGTCTGCGG 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCGAGTTTCCGGAGCTAGACTTGTCAGATGAATGGATGGATGATGATCTTGTGTCTGCGG 118
Query 119 TTTCGGGGATGAATCAGTCTTATGGTTATCAGACTAGTGATGTTGCTGCTGCTTTATTCT 178
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 119 TTTCCGGGATGAATCAGTCTTATGGTTATCAGACTAGTGATGTTGCTGGTGCTTTATTCT 178
Query 179 CAGGTTCTTCTAGCAGTTTCTGTCATCCCGAATCTCAAAGGACCAACGCTTCTGTTGCGG 238
|||||||||||||| ||||| ||||||| ||||||| ||| ||||| ||| |||||| |
Sbjct 179 CAGGTTCTTCTAGCTGTTTCAGTCATCCTGAATCTCCAAGTACCAAAACTTATGTTGCTG 238
Query 239 CTACAGCCACTGCCTCTGCCGACAACCAAAACAAGAAAGAAAAGAAGAAAGTTAAAGAGA 298
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 239 CTACAGCCACTGCTTCTGCCGACAACCAAAACAAGAAAGAAAAGAAAAAAATTAAAGGGA 298
Query 299 GAGCTGCGTTCAAGACACGGTCTGAGGTGGAAGTGCTTGATGACGGGTTCAAGTGGAGAA 358
||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 299 GAGTTGCGTTCAAGACACGGTCCGAGGTGGAAGTGCTTGACGACGGGTTCAAGTGGAGAA 358
Query 359 AGTATGGGAAGAAGATGGTGAAGAACAGCCCACATCCCAGAAACTACTACAAATGTTCAG 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 AGTATGGGAAGAAGATGGTGAAGAACAGCCCACATCCAAGAAACTACTACAAATGTTCAG 418
Query 419 TTGATAGCTGTCCTGTGAAGAAAAGGGTTGAAAGAGATAGAGATGATCCGAGCTTTGTGA 478
||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 419 TTGATGGCTGTCCCGTGAAGAAAAGGGTTGAACGAGACAGAGATGATCCGAGCTTTGTGA 478
Query 479 TAACAACTTACGAGGGCTCCCACAATCACTTAAGCGCGAACTAA 522
|||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 479 TAACAACTTACGAGGGTTCCCACAATCACTCAAGCATGAACTAA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5