BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351631

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11964.1 | Symbols:  | RNA binding;RNA binding | chr3:379395...   204    5e-52
  AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-172...   148    3e-35
  AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-171...   117    7e-26


> AT3G11964.1 | Symbols:  | RNA binding;RNA binding | chr3:3793957-3806626 
REVERSE LENGTH=5691
Length=5691

 Score =  204 bits (110),  Expect = 5e-52
 Identities = 127/135 (94%), Gaps = 2/135 (1%)
 Strand=Plus/Plus

Query  70    GTAAATGCTGGTGGGCAGCCAAAATCTGAATCATATGACTTAAAGAAATTCCATGTTGGA  129
             |||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||
Sbjct  4246  GTAAATGCTGGTGGGCGGCCAAAATCTGAATCTTATGACTTGAAGAAACTCCATGTTGGA  4305

Query  130   GATATGATTAT-TGGGAGAATCAAACGTGTGGAGCCCTATGGCTTATTCATTGACATTGA  188
             ||||||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  4306  GATATGATT-TCTGGGAGAATCAGACGTGTGGAGCCCTTTGGCTTATTCATTGACATTGA  4364

Query  189   TCAAACTGGCATGGT  203
             |||||||||||||||
Sbjct  4365  TCAAACTGGCATGGT  4379


> AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-1725182 
REVERSE LENGTH=2829
Length=2829

 Score =  148 bits (80),  Expect = 3e-35
 Identities = 101/111 (91%), Gaps = 2/111 (2%)
 Strand=Plus/Plus

Query  202   GTGAAAAAGAAGACTATAGCTGCAAGACGGAGTCAAGTGAAAATGATTATATTCCCGGAA  261
             |||||| ||||||||||||||||||||||||||||||||||  |||| |||||||| || 
Sbjct  2656  GTGAAAGAGAAGACTATAGCTGCAAGACGGAGTCAAGTGAAGGTGATAATATTCCCTGAG  2715

Query  262   GCTAACCGGAAAGATTTTGATGAGCTGGCG-GAAAACGTGAAAGAAGTGCT  311
             |||||||||| ||||||||||||||||||| |||| ||||||||||| |||
Sbjct  2716  GCTAACCGGAGAGATTTTGATGAGCTGGCGAGAAA-CGTGAAAGAAGGGCT  2765


> AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-1719608 
REVERSE LENGTH=2775
Length=2775

 Score =  117 bits (63),  Expect = 7e-26
 Identities = 94/109 (86%), Gaps = 2/109 (2%)
 Strand=Plus/Plus

Query  209   AGAAGACTATAGCTGCAAGACGGAGTCA-AGTGAAAATGATTATATTCCCGGAAGCTAAC  267
             |||||||||||||||||||||||||||| | | || |  || |||||||||||||| || 
Sbjct  2609  AGAAGACTATAGCTGCAAGACGGAGTCAGA-TCAAGACAATAATATTCCCGGAAGCAAAT  2667

Query  268   CGGAAAGATTTTGATGAGCTGGCGGAAAACGTGAAAGAAGTGCTTGATG  316
             |||| ||| ||||| ||||| ||||||||| ||||||||| ||||||||
Sbjct  2668  CGGAGAGACTTTGAGGAGCTTGCGGAAAACATGAAAGAAGGGCTTGATG  2716



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5