BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg351631 Length=348 Score E Sequences producing significant alignments: (Bits) Value AT3G11964.1 | Symbols: | RNA binding;RNA binding | chr3:379395... 204 5e-52 AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-172... 148 3e-35 AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-171... 117 7e-26 > AT3G11964.1 | Symbols: | RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=5691 Length=5691 Score = 204 bits (110), Expect = 5e-52 Identities = 127/135 (94%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 70 GTAAATGCTGGTGGGCAGCCAAAATCTGAATCATATGACTTAAAGAAATTCCATGTTGGA 129 |||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||| Sbjct 4246 GTAAATGCTGGTGGGCGGCCAAAATCTGAATCTTATGACTTGAAGAAACTCCATGTTGGA 4305 Query 130 GATATGATTAT-TGGGAGAATCAAACGTGTGGAGCCCTATGGCTTATTCATTGACATTGA 188 ||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 4306 GATATGATT-TCTGGGAGAATCAGACGTGTGGAGCCCTTTGGCTTATTCATTGACATTGA 4364 Query 189 TCAAACTGGCATGGT 203 ||||||||||||||| Sbjct 4365 TCAAACTGGCATGGT 4379 > AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-1725182 REVERSE LENGTH=2829 Length=2829 Score = 148 bits (80), Expect = 3e-35 Identities = 101/111 (91%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 202 GTGAAAAAGAAGACTATAGCTGCAAGACGGAGTCAAGTGAAAATGATTATATTCCCGGAA 261 |||||| |||||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 2656 GTGAAAGAGAAGACTATAGCTGCAAGACGGAGTCAAGTGAAGGTGATAATATTCCCTGAG 2715 Query 262 GCTAACCGGAAAGATTTTGATGAGCTGGCG-GAAAACGTGAAAGAAGTGCT 311 |||||||||| ||||||||||||||||||| |||| ||||||||||| ||| Sbjct 2716 GCTAACCGGAGAGATTTTGATGAGCTGGCGAGAAA-CGTGAAAGAAGGGCT 2765 > AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-1719608 REVERSE LENGTH=2775 Length=2775 Score = 117 bits (63), Expect = 7e-26 Identities = 94/109 (86%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 209 AGAAGACTATAGCTGCAAGACGGAGTCA-AGTGAAAATGATTATATTCCCGGAAGCTAAC 267 |||||||||||||||||||||||||||| | | || | || |||||||||||||| || Sbjct 2609 AGAAGACTATAGCTGCAAGACGGAGTCAGA-TCAAGACAATAATATTCCCGGAAGCAAAT 2667 Query 268 CGGAAAGATTTTGATGAGCTGGCGGAAAACGTGAAAGAAGTGCTTGATG 316 |||| ||| ||||| ||||| ||||||||| ||||||||| |||||||| Sbjct 2668 CGGAGAGACTTTGAGGAGCTTGCGGAAAACATGAAAGAAGGGCTTGATG 2716 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16286750676 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5