BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351641
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26250.1 | Symbols: | Major facilitator superfamily protein... 2438 0.0
AT3G05960.1 | Symbols: ATSTP6, STP6 | sugar transporter 6 | chr... 1280 0.0
> AT5G26250.1 | Symbols: | Major facilitator superfamily protein
| chr5:9196758-9198801 FORWARD LENGTH=1644
Length=1644
Score = 2438 bits (1320), Expect = 0.0
Identities = 1456/1524 (96%), Gaps = 0/1524 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTGGTTATATCGTCTAATGGTAATTCCAAGGCTTTCGACGCGAAGATGACTGTT 60
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCTGTGGTTATATCTTCTAATGGTAATTCCAAGTCTTTCGACGCGAAGATGACTGTT 60
Query 61 TATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACATC 120
Query 121 GGAATCTCTGGTGGAGTAACGGCGATGGACGATTTCTTGAAGGAATTTTTCCCATCTGTG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAATCTCGGGTGGAGTAACGGCGATGGACGATTTCTTGAAGGAATTTTTCCCATCTGTG 180
Query 181 TACGAGAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTACGACAACCAGTTCTTG 240
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TACGAAAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTATGACAACCAGTTCTTG 240
Query 241 CAGCTCTTCACTTCCTCTCTATACCTTGCGGCTCTAGTGGCTAGCTTCTTTGCTTCCGCT 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 241 CAGCTCTTCACTTCCTCTCTATACCTAGCGGCTCTAGTGGCTAGCTTCTTTGCTTCGGCT 300
Query 301 ACGTGCTCTAAGCTCGGACGCAGACCCACAATGCAGCTCGCTTCCATTTTCTTCTTGATC 360
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 301 ACATGCTCTAAGCTCGGACGCAGACCCACAATGCAACTCGCTTCCATCTTCTTCTTGATC 360
Query 361 GGTGTTGGCCTAGCCGCGGGAGCTGTTAACATTTACATGTTGATCTTTGGTAGAATCTTG 420
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 361 GGTGTTGGCCTTGCCGCGGGAGCTGTTAACATATACATGTTGATCATTGGTAGAATCTTG 420
Query 421 CTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCACTTTTCTTATCAGAGATTGCT 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCGCTTTTCTTATCAGAGATTGCT 480
Query 481 CCGGCTAGGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTAATGGTTACAATTGGAATC 540
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 CCCGCGAGGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTTATGGTTACAATTGGAATC 540
Query 541 CTAATCGCTAACATAGTCAACTACTTCACCTCCTCAATTCATCCTTACGGATGGCGACTT 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 541 CTAATTGCTAACATAGTCAACTACTTCACCTCCTCAATTCATCCTTACGGATGGAGAATT 600
Query 601 GCCCTTGGTGGCGCGGGAATTCCTGCTCTCATCCTCCTCTTCGGATCACTTCTCATCTGC 660
||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 601 GCCCTCGGTGGCGCGGGAATTCCGGCTCTCATCCTCCTCTTTGGATCGCTTCTCATCTGC 660
Query 661 GAAACACCAACAAGTCTCATCGAACGGAACAAAACCAAGGAAGGCAAAGAAACGCTCAAG 720
|||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 661 GAAACACCCACTAGTCTCATCGAACGGAACAAAACCAAGGAAGGAAAAGAAACACTCAAG 720
Query 721 AAGATTAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATCGTCCATGCTTGCGAT 780
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 AAGATCAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATAGTCCATGCTTGCGAT 780
Query 781 TTCGCGAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAGCCGACCGCCT 840
|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 781 ATCGCAAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAGCAGGCCGCCT 840
Query 841 TTCGTGATAGGAATGTTGCTCCAGTTTTTCCAACAACTCACTGGAATCAACGCAATTATG 900
|||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 841 TTCGTGATTGGAATGTTGCTACAGTTTTTCCAACAGTTCACTGGAATCAACGCGATTATG 900
Query 901 TTCTATGCTCCGGTTTTGTTCCAGACCGTAGGGTTTGGAAATGACGCAGCTCTGCTTTCC 960
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 TTCTACGCTCCGGTTTTGTTCCAGACTGTAGGGTTTGGAAATGACGCAGCTCTGCTTTCC 960
Query 961 GCGGTTATCACGGGAACTATCAACGTTCTCAGCACGTTTGTCGGGATTTTCCTCGTCGAC 1020
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GCGGTTGTCACGGGAACGATCAACGTTCTCAGCACGTTTGTCGGGATTTTCCTTGTCGAC 1020
Query 1021 AAAACCGGCCGAAGATTTCTATTGCTCCAGTCTTCCGTTCACATGCTCGTCTGCCAGTTG 1080
||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 1021 AAAACTGGCCGAAGATTTCTATTGCTCCAATCTTCCGTTCACATGCTCATATGCCAGTTG 1080
Query 1081 GTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACACTAGGACGGCCACAA 1140
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1081 GTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACGCTAGCACGGCCACAA 1140
Query 1141 GCCCTAGTAGTGGTGATCTTCGTGTGCGTTTACGTGATGGGTTTCGCTTGGTCATGGGGT 1200
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 GCCCTAGTAGTGGTGATCTTCGTGTGTGTTTACGTGATGGGTTTCGCTTGGTCATGGGGC 1200
Query 1201 CCTCTAGGATGGCTAATCCCTAGCGAGACCTTCCCCGTGGAGACTCGAACCGAAGGGTTC 1260
||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||
Sbjct 1201 CCTCTAGGATGGCTAATCCCTAGTGAGACCTTCCCCTTGGAGACTCGAACGGAAGGGTTC 1260
Query 1261 GCTTTGGCGGTGTCGTGCAACATGTTCTTCACGTTCGTGATCGCTCAGGCCTTCCTGTCG 1320
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1261 GCATTGGCCGTGTCTTGCAACATGTTCTTCACGTTCGTGATCGCTCAGGCCTTCCTATCG 1320
Query 1321 ATGCTTTGCGGGATGAAGTCAGGTATATTCTTCTTCTTCAGTGGTTGGATCGTTGTGATG 1380
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATGCTTTGCGCGATGAAGTCAGGGATATTCTTCTTCTTCAGTGGTTGGATCGTTGTGATG 1380
Query 1381 GGACTTTTCGCTTTGTTCTTCGTGCCGGAGACGAAAGGAGTCGCGATCGATGACATGAGA 1440
||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||
Sbjct 1381 GGACTTTTCGCTTTGTTCTTCGTGCCGGAAACGAAAGGAGTCTCCATTGATGACATGAGA 1440
Query 1441 GATAGCGTGTGGAAGCTACATTGGTACTGGAAGAGGTTTATGCTTGAGGAAGATGAGCAT 1500
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1441 GATAGTGTGTGGAAGCTACATTGGTACTGGAAGAGGTTTATGCTCGAGGAAGATGAGCAT 1500
Query 1501 GACGTAGAGAAGAGAACTGATTGA 1524
||||| ||||||||||||||||||
Sbjct 1501 GACGTTGAGAAGAGAACTGATTGA 1524
> AT3G05960.1 | Symbols: ATSTP6, STP6 | sugar transporter 6 | chr3:1783587-1785334
REVERSE LENGTH=1524
Length=1524
Score = 1280 bits (693), Expect = 0.0
Identities = 1244/1509 (82%), Gaps = 42/1509 (3%)
Strand=Plus/Plus
Query 38 CTTTCGACGCGAAGATGACTGTTTATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCG 97
|||| || || ||||||||||| ||||| |||||||| || || || || ||||| ||||
Sbjct 36 CTTT-GAGGCCAAGATGACTGTCTATGTATTCATCTGCGTTATGATTGCCGCTGTCGGCG 94
Query 98 GTTTGATCTTCGGTTACGACATCGGAATCTCTGGTGGAGTAACG-GCGATGGACGATTTC 156
|||||||||||||||||||||||||||| || |||||||||| | || ||||||||||||
Sbjct 95 GTTTGATCTTCGGTTACGACATCGGAATTTCCGGTGGAGTAA-GTGCAATGGACGATTTC 153
Query 157 TTGAAGGAATTTTTCCCATCTGTGTACGAGAGGAAGAAGCATGCGCATGAGAACAACTAT 216
||||||||||||||||| | |||| |||||||||||||| | || |||||||||||
Sbjct 154 CTGAAGGAATTTTTCCCAGCGGTGTGGGAGAGGAAGAAGCACGTACACGAGAACAACTAC 213
Query 217 TGCAAGTACGACAACCAGTTCTTGCAGCTCTTCACTTCCTCTCTATACCTTGCGGCTCTA 276
||||||||||| |||||||||||||| || ||||| || ||||| ||||| || || ||
Sbjct 214 TGCAAGTACGATAACCAGTTCTTGCAACTGTTCACCTCGTCTCTTTACCTAGCTGCACTC 273
Query 277 GTGGCTAGCTTCTTTGCTTCCGCTACGTGCTCTAAGCTCGGACGCAGACCCACAATGCAG 336
||||| || ||| | || ||||| || || ||||| || |||||||| || || ||||||
Sbjct 274 GTGGCCAGTTTCGTCGCGTCCGCCACCTGTTCTAAACTTGGACGCAGGCCGACGATGCAG 333
Query 337 CTCGCTTCCATTTTCTTCTTGATCGGTGTTGGCCT-AGCCGCGGGAGCTGTTAACATT-T 394
| ||||| || ||||||||||| ||||| || || | | || ||||| |||||| | |
Sbjct 334 TTTGCTTCTATCTTCTTCTTGATTGGTGTCGGTCTCA-CTGCAGGAGCCGTTAACCTCGT 392
Query 395 ACATGTTGATCTTTGGTAGAATCTTGCTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGG 454
|||||||||| |||| ||| |||| ||||| || |||||||| ||||| |||||||| |
Sbjct 393 -CATGTTGATCATTGGAAGACTCTTTCTTGGCTTTGGTGTTGGATTTGGCAATCAGGCAG 451
Query 455 TACCACTTTTCTTATCAGAGATTGCTCCGGCT-AGGCTTCGTGGAGGTCTCAACATTGTT 513
| || |||||| | || ||||||||||| || || || || |||||||||||||||||
Sbjct 452 TGCCTCTTTTCCTGTCTGAGATTGCTCCAGCACAG-CTCCGAGGAGGTCTCAACATTGTA 510
Query 514 TTCCAACTAATGGTTACAATTGGAATCCTAATCGCTAACATAGTCAACTACTTCACCT-C 572
|||||||| ||||||||||| ||||||||||| || ||||| |||||||||||||| | |
Sbjct 511 TTCCAACTCATGGTTACAATCGGAATCCTAATTGCCAACATTGTCAACTACTTCAC-TGC 569
Query 573 CTCAATTCATCCTTACGGATGGCG-ACTTGCCCTTGGTGGCGCGGGAATTCCTGCTCTCA 631
| | |||| |||||||||||| | | |||| || ||||| || |||||||| ||| | |
Sbjct 570 CACGGTTCACCCTTACGGATGGAGGA-TTGCTCTCGGTGGAGCTGGAATTCCCGCTGTTA 628
Query 632 TCCTCCTCTTCGGATCACTTCTCATC-TGCGAAACACCAACAAGTCTCATCGAACGGAAC 690
||||||||||||| ||||| || ||| | || || || |||||||||||||| || |||
Sbjct 629 TCCTCCTCTTCGGTTCACTACTTATCATT-GAGACTCCCACAAGTCTCATCGAGCGCAAC 687
Query 691 AA-AACCAAGGAAGGCAAAGAAACGCTCAAG-AAGATTAGAGGCGTTGAAGATGTTGATG 748
|| ||| ||| |||| |||||| | || ||| ||||| ||||| ||||| ||| | |||
Sbjct 688 AAGAACGAAG-AAGGAAAAGAAGCCCT-AAGGAAGATCAGAGGAGTTGATGATATCAATG 745
Query 749 AGGAGTATGAATCAATCGTCCATGCTTGCGATTTCGCGAGGCAGGTCAAGGACCCTTACA 808
| |||||||| || ||||||||||| || || ||||||| || ||||||||||||||||
Sbjct 746 ACGAGTATGAGTCTATCGTCCATGCATGTGACATCGCGAGTCAAGTCAAGGACCCTTACA 805
Query 809 CGAAACTGATGAAACCCGCGAGCCGACCGCCTTTCGTGATAGGAATG-TTGCTCCAGTTT 867
||||||| |||| |||||||| || || || ||| | || |||||| || |||||| ||
Sbjct 806 GGAAACTGTTGAAGCCCGCGAGTCGCCCACCGTTCATCATCGGAATGCTT-CTCCAGCTT 864
Query 868 TTCCAACAACTCACTGGAATCAACGCAATTATGTTCTATGCTCCGGTTTTGTTCCAGACC 927
||||||||| | || |||||||| || |||||||||||||| ||||| || ||||| ||
Sbjct 865 TTCCAACAATTTACCGGAATCAATGCGATTATGTTCTATGCGCCGGTCTTATTCCAAACT 924
Query 928 GTAGGGTTTGGAAATGACGCAGCTCTGCTTTCCGCGGTTATCACGGGAACTATCAACGTT 987
|| ||||| |||| |||||||| || || || ||||||||||| ||| | ||||| |||
Sbjct 925 GTTGGGTTCGGAAGCGACGCAGCCCTTCTCTCTGCGGTTATCACCGGATCGATCAATGTT 984
Query 988 CTCAGC-ACGTTTGTCGGGATTTTCCTCGTCGACAAAACCGGCCGAAGATTTCTA-TTGC 1045
||| || ||||| || ||||||| |||||| |||| ||||||| | || || || || |
Sbjct 985 CTC-GCCACGTTCGTTGGGATTTACCTCGTTGACAGAACCGGCAGGAGGTTCCTTCTT-C 1042
Query 1046 TCCAGTCTTCCGTTCACATGCTCGTCTGCCAGTTGGTCATTGGAATCATCCTAGCCAAGG 1105
|||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1043 TCCAATCTTCCGTTCACATGCTCATCTGCCAGTTGATCATTGGAATCATCCTAGCAAAGG 1102
Query 1106 ACCTAGACGTGACGGGTACACTAGG-ACGGCCACAAGCCCTAGTAGTGGTGATCTTCGTG 1164
|| | | ||| ||||| ||||| || | |||||||||||||||||||||||||||| |||
Sbjct 1103 ACTTGGGCGTAACGGGAACACTCGGGA-GGCCACAAGCCCTAGTAGTGGTGATCTTTGTG 1161
Query 1165 TGCGTTTACGTGATGGG-TTTCGCTTGGTCATGGGGTCCTCTAGGATGGCTAATCCCTAG 1223
||||||||||||||||| ||| || ||||||||||| ||| | ||||||||||| |||||
Sbjct 1162 TGCGTTTACGTGATGGGATTT-GCATGGTCATGGGGACCTTTGGGATGGCTAATTCCTAG 1220
Query 1224 CGAGACCTTCCC-CGTGGAGACTCGAACCGAAGGGTTCGCT-TTGGCGGTGTCGTGCAAC 1281
|||||| || || | | || || || | || ||| |||||| ||| | || || ||||||
Sbjct 1221 CGAGACGTTTCCTC-TAGAAACACGTAGCGCAGGATTCGCTGTTG-CAGTCTCATGCAAC 1278
Query 1282 ATGTTCTTCACGTTCGTGATCGCTCAGGCCTTCCTGTCGATGCTTTGCGGGATGA-AGTC 1340
||||||||||| || || |||||||| |||||||| ||||||||||||||||||| | ||
Sbjct 1279 ATGTTCTTCACTTTTGTAATCGCTCAAGCCTTCCTATCGATGCTTTGCGGGATGAGA-TC 1337
Query 1341 AGGTATATTCTTCTTCTTCAGTGGTTGGATCGTTGTGATGGGACT-TTT-CGCTTTGTTC 1398
|| ||||||||||||||||| ||||||||| ||||||||||||| ||| || ||| |||
Sbjct 1338 TGGAATATTCTTCTTCTTCAGCGGTTGGATCATTGTGATGGGACTGTTTGCG-TTT-TTC 1395
Query 1399 TTCGTGCCGGAGACGAAAGGAGTCGCGATCGATGACATGAGAGATAGCGTGTGGAAGCTA 1458
||| | || ||||| |||||| |||| || ||||||||||| || || |||||||||| |
Sbjct 1396 TTCATACCAGAGACAAAAGGAATCGCCATTGATGACATGAGGGAGAGTGTGTGGAAGCCA 1455
Query 1459 CATTGGTACTGGAAGAGGTTTATGCTT---GAGGAAGATGAGCATGACGTAGAGAAGAGA 1515
||||||| |||||| |||| ||||||| ||||| || | |||||| |||||||||||
Sbjct 1456 CATTGGTTCTGGAAAAGGTATATGCTTCCAGAGGACGACCACCATGACATAGAGAAGAGA 1515
Query 1516 ACTGATTGA 1524
| || ||||
Sbjct 1516 AATGCTTGA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5