BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351649
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50860.1 | Symbols: | Protein kinase superfamily protein | ... 414 4e-115
AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible 2 ... 196 2e-49
AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid induci... 143 2e-33
> AT5G50860.1 | Symbols: | Protein kinase superfamily protein
| chr5:20693463-20697039 REVERSE LENGTH=2114
Length=2114
Score = 414 bits (224), Expect = 4e-115
Identities = 277/302 (92%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 70 GTCGAAATCGGAGAG--G-AGAAGAAGGGTTTAGACTCGATTCAGATTCAGCC-G-CCG- 123
||||||||||||||| | ||||||| | |||||| ||||||||||||||||| | |
Sbjct 192 GTCGAAATCGGAGAGAAGAAGAAGAAAGATTTAGATTCGATTCAGATTCAGCCGGAGAGA 251
Query 124 AGAACATGGCACACTGGCGATTTCTCCGCCGGCTCTTCTCGCCGGCCGGGGATGAGCCTC 183
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 252 AGAACATGGCACACTGGCGACTTCTCCGCCGGCTCTTCTCGCCGTCCGGGGATGAGTCTC 311
Query 184 CGTATGCCGGAAGGATGGCCACCGTGGCTGATTTCTGCTTGCGGCGATTCGATCAAAGAC 243
|||| |||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||
Sbjct 312 CGTACGCCGGAAGGATGGCCACCTTGGCTTATTGCTGCTTGTGGCGATTCGATCAAAGAC 371
Query 244 TTAACACCTCGCAGAGCCACCACATACGAAAAGCTCGAGAAGATTGGGCAAGGAACTTAT 303
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 372 TTAACACCTCGCAGAGCTACCACATACGAAAAGCTCGAGAAGATTGGGCAAGGAACGTAT 431
Query 304 AGTAATGTGTACAAGGCGAAAAATTTATTGACTGGGAAGATTGTAGTTTTGAAGAAAGTT 363
|| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 432 AGCAATGTGTACAAGGCGAAAGATTTATTGAGTGGGAAGATTGTAGCTTTGAAGAAAGTT 491
Query 364 AG 365
||
Sbjct 492 AG 493
Score = 145 bits (78), Expect = 6e-34
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 363 TAGTCTCTACCTTGTTTTTGAGTATATGGAGCATGATCTTTCTGGTCTTTCTGCTACTCA 422
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 614 TAGTCTCTACCTTGTTTTTGAGTATATGGAGCATGATCTTTCTGGTCTTGCTGCTACCCA 673
Query 423 AGGTCTCAAGTTTGATCTTCCACAGGT 449
||||||||||||||||||||| |||||
Sbjct 674 AGGTCTCAAGTTTGATCTTCCTCAGGT 700
> AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible
2 | chr3:8180768-8181800 REVERSE LENGTH=941
Length=941
Score = 196 bits (106), Expect = 2e-49
Identities = 143/160 (89%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 480 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 538
||| ||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||
Sbjct 495 GATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATG 554
Query 539 TTCCATGGGACATGTTCTCTTCTTCCTGTAAAAGACTCGGAATCATGAAAGGAT-----G 593
||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| |
Sbjct 555 TTCCATGGGACATGTTCTCTTCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACG 614
Query 594 CTCCTGCTCTAGACTCTTCCTTATGATCTACAGAAGATGA 633
|||||||||||||||||||||||||||| | ||||| |||
Sbjct 615 CTCCTGCTCTAGACTCTTCCTTATGATCCAGAGAAGCTGA 654
> AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid inducible
| chr4:8361058-8361986 FORWARD LENGTH=837
Length=837
Score = 143 bits (77), Expect = 2e-33
Identities = 103/115 (90%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 480 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 538
||| |||||||||||| || || || || ||||||||||||||||||||||| |||||||
Sbjct 495 GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG 554
Query 539 TTCCATGGGACATGTTCTCTTCTTCCTGT-AAAAGACTCGGAATCATGAAAGGAT 592
|||||||||||||||||||||| || ||| |||| |||| |||||||||||||||
Sbjct 555 TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGAT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5