BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351655
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT3G32023.1 | Symbols: | transposable element gene | chr3:1299... 139 2e-32
> AT3G32023.1 | Symbols: | transposable element gene | chr3:12993299-12994435
REVERSE LENGTH=1137
Length=1137
Score = 139 bits (75), Expect = 2e-32
Identities = 100/112 (89%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 110 CAAATTCACAGGCTGTAAATGTTGAACCAAATGAACAGAGAGAACAAGCTGC-ACTAGTA 168
||||| ||| |||| |||| ||||| ||||||||||||||||||||||||| || ||
Sbjct 137 CAAATGAACAAGCTGCAAATATTGAAGCAAATGAACAGAGAGAACAAGCTGCGCCT-GTC 195
Query 169 ATACGTGACATTCGACAGCTCCACCCCTTAAGAAGGAATGGAGCTAAATGGT 220
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 196 ATACGTGACATTCGAGTGCTCCACCCCTTAAGAAGGAATGGAGCTAAATGGT 247
Score = 126 bits (68), Expect = 2e-28
Identities = 122/148 (82%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 1 ATGACTCGATCTCCTATCGTAAGTGGACGTTCGTTTGTGAGAGGAACAAATTTCCAATAT 60
||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1 ATGACACGACCTCCAATCGTAAGTGGACGTTCGTTTGTGAGAGGAACAAATTTCGAGTCT 60
Query 61 GCTGGTTCT-CAATTTGCTGGTTTGCAAAGACCATTGGCTCATGCACCCC-CAAATTCAC 118
|| || || || | | ||||||||||||||||||||| || | || | ||||| |||
Sbjct 61 ACTAGTACTTCA-TATACTGGTTTGCAAAGACCATTGGTTCCT-CAAATCTCAAATGCAC 118
Query 119 AGGCTGTAAATGTTGAACCAAATGAACA 146
| |||| | || ||||| ||||||||||
Sbjct 119 AAGCTGCATATATTGAAGCAAATGAACA 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5