BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351658
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26730.1 | Symbols: | Fasciclin-like arabinogalactan family... 793 0.0
> AT5G26730.1 | Symbols: | Fasciclin-like arabinogalactan family
protein | chr5:9300416-9301990 FORWARD LENGTH=813
Length=813
Score = 793 bits (429), Expect = 0.0
Identities = 476/499 (95%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 361 CCACATCTCATATTGAGACATGACAACTACAACCAAACCGATCTCATCTCTGCCATGACC 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 316 CCACATCTCATATTGAGACATGACAACTACAACCAAACCGACCTCATCTCTGCCATGACC 375
Query 421 GACATGAGAAGGCAATCTTACAACGGTTTTGTCATCCTTCTCCGTTTCCTCAACGATACA 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 376 GACATGAGAAGGCAATCTTACAACGGTTTTGTCATCCTTCTTCGTTTCCTCAACGATACA 435
Query 481 AATTACTTCAGGAACACAGATATTACTTTCTTGATGCCTAGCGACAACGATATTTCTCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AATTACTTCAGGAACACAGATATTACTTTCTTGATGCCTAGCGACAACGATATTTCTCAT 495
Query 541 GCAGACATTACTCCAGAGAATCTTGAGACATTTATCCTAAAACATACCATCCCGGCATGG 600
|||||||||||||| |||| |||||| |||||||||||||||||||| ||||| || |||
Sbjct 496 GCAGACATTACTCCGGAGAGTCTTGAAACATTTATCCTAAAACATACGATCCCTGCTTGG 555
Query 601 CTTATGATCAATCACATGCTTCATTTTCCAAACAGAACTCTTGTTCCTTGTAGCCTCTCT 660
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 556 CTTATGATCAACCACATGCTTCATTTTCCAAACAGAACTCTTGTTCCTTGTAGCTTCTCT 615
Query 661 GATAAAATGTTCACCATCACAAAATCTGGAGGGTCCGGGATTTATGTGAACAATGCGAGG 720
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 616 GATAGAATGTTCACCATCACAAAATCTGGAGGGTCCGGGATATATGTGAACAACGCGAGG 675
Query 721 ATTGTTACTCCTAATGTTTGTCAGAATTCTCGTATATCTTGCCATGGAATCAGTGACGTT 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 676 ATCGTTACTCCTAATGTTTGTCAGAATTCTCGTATATCTTGCCATGGAATCAGCGACGTT 735
Query 781 AT-TGCATTCAACCAAAACTATATGTCAACGAAAATGTTATCATCCGTTCGTCGAAACAT 839
|| | ||||||||||||||||| | ||||||||||||||| |||| ||||||||||||||
Sbjct 736 ATCT-CATTCAACCAAAACTATGTTTCAACGAAAATGTTACCATCAGTTCGTCGAAACAT 794
Query 840 CACTTCGTTGAAGCATTGA 858
|||||||| |||||||||
Sbjct 795 CACTTCGTCAAAGCATTGA 813
Score = 366 bits (198), Expect = 2e-100
Identities = 237/255 (93%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 1 ATGTGGTGGGTTGTACATCGACGGATGAGCAAGAGGAACTTAAATCGTGATTGTGAGAAT 60
|||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||
Sbjct 7 ATGTGGTGGGTTGTACATCGACGGATGAACAAGCGGAACTTAAACCGTGATTGCGAGAAT 66
Query 61 AAGAGGATATGTGAGTTGGGGAAAGACTTGGAGGAGATACTAAAGGGGAGGCTCGAGACG 120
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 67 AAGAGGATATGTGAGTTGGGGAAAGACTTGGAAGAGATATTAAAGGGGAGGCTCGAGACG 126
Query 121 ATAGAGGAGGAACCGGAAGTAGAAGAGCGAGAGCGGTTAGGAGACTCGCAGATGCAGAAG 180
||||||||||||||||||| |||||||||||||||||||||||||||||| | | | |
Sbjct 127 ATAGAGGAGGAACCGGAAGCAGAAGAGCGAGAGCGGTTAGGAGACTCGCA--T--A-A-G 180
Query 181 CCAATGTTGATTAAGGCTAAGATGAAAGTGGAGAAAGGAAAGGCAATAGTAAAAGCAAAA 240
||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CCAATGTTGGTGAAGGCAAAGATGAAAGTGGAGAAAGGAAAATCAATAGTAAAAGCAAAA 240
Query 241 GTGAAGAGTGGGAAA 255
|||||||||||||||
Sbjct 241 GTGAAGAGTGGGAAA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5