BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351661

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26690.1 | Symbols:  | Heavy metal transport/detoxification ...   510    3e-144


> AT5G26690.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr5:9310797-9311572 FORWARD LENGTH=614
Length=614

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 326/349 (93%), Gaps = 8/349 (2%)
 Strand=Plus/Plus

Query  1    ATGACGACTAAGAAAATCGAGATCAAAGTGAATATCGATTGTGAGAAATGCAAACATGCA  60
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  109  ATGACGACTAAGAAAATCGAGATCAAAGTGGATATCGATTGTGAGAAATGCAAACATGCA  168

Query  61   ATCATGGAGGCTGTTACAGAGCTAGAAGGTGTGAATATAGTTTCACTGGATCAAGAGAAG  120
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169  ATCATGGAAGCTGTCACAGAGCTAGAAGGTGTGAATATAGTTTCACTGGATCAAGAGAAG  228

Query  121  GGTATACTAACCGTGGTGGGTACTATGGATCCGGTCTGCGTAGCAGAACAGCTTAAGAAG  180
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  229  AGTATACTAACCGTGGTGGGTACTATGGATCCGGTCTGCGTAGCAGAACAGCTTAAGAAG  288

Query  181  GTTAA-ACAGAAACCAGTAGTAATCAGCGTCGGACCACCaaaaaaaCCAGACCCaaaaaa  239
             | || | ||||||||||||||||||||||||||||||| ||||||||||||||||||  
Sbjct  289  ATCAATA-AGAAACCAGTAGTAATCAGCGTCGGACCACCGAAAAAACCAGACCCAAAA--  345

Query  240  aCCAGACCCCAAGAAGGACCCTTGTTTC---CCTTACTACTATTACACCCCCCTTGACAT  296
             |||||||| ||||||||||||||||||   ||||||| ||| |||||||||| ||||||
Sbjct  346  -CCAGACCCTAAGAAGGACCCTTGTTTCATTCCTTACTGCTACTACACCCCCCGTGACAT  404

Query  297  GGTATCAGTCAATACCTATGAGAGCGGAAGCGGCTGCACCATCGTTTGA  345
            ||||||||| ||||||||||| |||||||| ||||||||||| ||||||
Sbjct  405  GGTATCAGTTAATACCTATGAAAGCGGAAGTGGCTGCACCATTGTTTGA  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5