BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351685
Length=3744
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27640.2 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF... 1646 0.0
AT5G25780.1 | Symbols: EIF3B-2, EIF3B, ATEIF3B-2 | eukaryotic t... 1616 0.0
> AT5G27640.2 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1
| translation initiation factor 3B1 | chr5:9781010-9785288
REVERSE LENGTH=2536
Length=2536
Score = 1646 bits (891), Expect = 0.0
Identities = 976/1017 (96%), Gaps = 5/1017 (0%)
Strand=Plus/Plus
Query 919 GGTGGTGGAAACCAACCTGCTAAGGTTGCTCTAGTCCAAATCCCGAGCAAGGTGGAGCTG 978
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1338 GGTGGTGGAAACCAACCTGCGAAGGTTGCCCTAGTCCAAATCCCGAGCAAGGTGGAGCTG 1397
Query 979 AGGCAGAAGAATCTCTTCAGTGTGAGCGACTGCAAGATGTACTGGCAGAGTAGTGGAGAG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 AGGCAGAAGAATCTCTTCAGTGTGAGCGACTGCAAGATGTACTGGCAGAGTAGTGGAGAG 1457
Query 1039 TATCTTGCTGTTAAGGTTGATCGATACACAAAAACTAAGAAGAGCACATACTCTGGATTT 1098
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TATCTTGCTGTCAAGGTTGATCGATACACAAAAACTAAGAAGAGCACATACTCTGGATTT 1517
Query 1099 GAGCTTTTCCGTATCAAAGAAAGGGATATTCCCATCGAGGTTCTTGAGCTGGATAACAAG 1158
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1518 GAACTTTTCCGTATCAAAGAAAGGGATATTCCCATCGAGGTTCTTGAGCTGGACAACAAG 1577
Query 1159 AACGACAAGATCATTGCTTTCGCTTGGGAGCCCAAGGGTCACAGGTTTGCTGTGATTCAT 1218
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1578 AACGACAAGATCATTGCTTTTGCATGGGAGCCCAAGGGTCACAGGTTTGCTGTGATTCAT 1637
Query 1219 GGTGACCAACCAAGACCAGATGTCAGTTTCTACTCGATGAAGACCGCACAAAATACTGGA 1278
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1638 GGTGACCAACCAAGACCAGATGTCAGTTTCTACTCAATGAAGACCGCACAAAACACTGGA 1697
Query 1279 AGGGTTTCAAAGCTCGCAACGTTGAAGGCCAAACAAGCCAATGCCCTCTTCTGGTCGCCC 1338
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1698 AGGGTTTCAAAGCTCGCAACTTTGAAGGCCAAACAAGCTAATGCCCTCTTCTGGTCGCCC 1757
Query 1339 ACAGGAAAGTACATCATTCTTGCTGGGTTAAAAGGTTTCAATGGCCAGCTTGAATTTTTC 1398
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 ACAGGCAAGTACATAATTCTTGCTGGGTTAAAAGGTTTCAATGGCCAGCTTGAATTTTTC 1817
Query 1399 AACGTGGATGAGCTCGAGACAATGGCAACATCTGAACACTTCATGGCCACGGATATCGAA 1458
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1818 AACGTGGATGAGCTCGAGACAATGGCCACAGCTGAACACTTCATGGCCACGGATATCGAA 1877
Query 1459 TGGGACCCAACTGGAAGGTACGTTGCAACCGCAGTGACATCAGTTCACGAGATGGAGAAT 1518
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1878 TGGGACCCGACTGGAAGGTACGTTGCAACCGCAGTGACATCAGTCCATGAGATGGAGAAT 1937
Query 1519 GGGTTCACCATGTGGTCTTTCAACGGGAATT-TGGTTTACCGGATACTGAAGGATCATTT 1577
||||||||||| |||||||||||||||| || || ||||||||||| |||||||||||||
Sbjct 1938 GGGTTCACCATATGGTCTTTCAACGGGA-TTATGCTTTACCGGATATTGAAGGATCATTT 1996
Query 1578 CTTCCAGTTGGCTTGGCGTCCAAGACCGCCATCATTCTTAACTGCAGAGAAGGAAGAAGA 1637
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1997 CTTCCAGTTGGCTTGGCGTCCAAGACCTCCATCATTCTTGACTGCAGAGAAGGAAGAAGA 2056
Query 1638 GATAGCAAAGAACCTGAAGAAGTACAGCAAGAAGTATGAGGCAGAGGATCAGGACGTATC 1697
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2057 GATAGCAAAGACCCTGAAGAAGTACAGCAAGAAGTATGAGGCAGAGGATCAGGACGTGTC 2116
Query 1698 GTTGCTGTTGAGTGAACAAGACAGAGAGAAGAGGAGGGCATTGAAGGAAGAATGGGAGAA 1757
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2117 GTTGCTGTTGAGTGAACAAGACAGAGAGAAGAGAAAGGCATTGAAGGAAGAATGGGAGAA 2176
Query 1758 ATGGGTGATGCAGTGGAAGTCTCTGCATGAAGAGGAGAAACTCGCGAGAAAAAATCTTCG 1817
|||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 2177 ATGGGTAATGCAGTGGAAGTCTCTGCATGAAGAGGAGAAACTCGTGAGGCAAAACCTTCG 2236
Query 1818 GGATGGTGAAGTTAGTGATGTGGAAGAAGATGAGTATGAAGCCAAAGAAGTTGAGTTTGA 1877
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2237 GGATGGTGAAGTAAGTGATGTGGAAGAAGATGAATATGAAGCCAAAGAAGTTGAGTTTGA 2296
Query 1878 GGATCTTATTGATGTCACTGAGGAAATCGTTCAAGAGTCGATA-GATTCGTCGGTCT 1933
||||||||| |||||||||||||||||||||||||||||| || ||| | |||||||
Sbjct 2297 GGATCTTATCGATGTCACTGAGGAAATCGTTCAAGAGTCG-TAAGATAC-TCGGTCT 2351
Score = 737 bits (399), Expect = 0.0
Identities = 428/442 (97%), Gaps = 1/442 (0%)
Strand=Plus/Plus
Query 479 TGG-CAGAGAGTTATGTGCAGTGGTCTCCTTTAGGTACATACCTTGTGACACTTCACAAG 537
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 828 TGGACAGAGAGTTATGTGCAGTGGTCTCCTTTAGGTACATACCTTGTGACACTCCACAAG 887
Query 538 CAGGGGGCAGCTGTTTGGGGTGGTACTGATACATTCACGCGTCTCATGCGTTATCAGCAT 597
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 888 CAGGGGGCAGCTGTTTGGGGTGGTGCTGATACATTCACGCGTCTCATGCGTTATCAGCAT 947
Query 598 TCTATGGTCAAACTTGTTGATTTCTCGCCAGGTGAGAGATATCTTGTAACTTACCATAGC 657
|||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 948 TCTATGGTAAAACTAGTTGATTTCTCGCCAGGTGAGAAATATCTTGTAACTTACCATAGC 1007
Query 658 CAAGAACCAAGCAATCCGAGAGATGCAAGTAAAGTAGAGATTAAGGTCTTTGATGTGAGA 717
|||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1008 CAAGAACCAAGCAACCCGCGAGATGCAAGTAAAGTTGAGATTAAGGTTTTTGATGTGAGA 1067
Query 718 ACCGGGAGGATGATGAGAGATTTCAAGGGTAGTGCTGATGAGTTTTCAATTGGAGGACCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 ACCGGGAGGATGATGAGAGATTTCAAGGGTAGTGCTGATGAGTTTTCAATTGGAGGACCT 1127
Query 778 GGTGGTGTTGCTGGCGCCTCTTGGCCTGTTTTCAGATGGGCTGGTGGAAAAGATGATAGA 837
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1128 GGTGGTGTTGCTGGTGCCTCTTGGCCTGTTTTCAGATGGGCTGGTGGAAAAGATGATAAA 1187
Query 838 TACTTTGCCAAGCTTAGCAAAAACACCATCTCTGTCTATGAGACTGAGACTTTCAGCCTA 897
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1188 TACTTTGCCAAGCTTAGCAAAAACACTATCTCTGTCTATGAGACTGAGACTTTCAGCCTA 1247
Query 898 ATAGACAAGACATCCATGAAGG 919
|||||||||| |||||||||||
Sbjct 1248 ATAGACAAGAAATCCATGAAGG 1269
Score = 132 bits (71), Expect = 3e-29
Identities = 81/86 (94%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 351 GCTAGTCATTCGTTCTGGCCCTGATACTGAAGTTTACTGGAATGATGCAAGGCAGAAGAA 410
||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 740 GCTAGTCATTCGTTCTGGCCCTGATACTGAAGTTTTCTGGAATGATACTAGGCAGAAGGC 799
Query 411 GCCTGAACCTGTTCATAAGCGTCCTT 436
||||||||||||||||||||||||||
Sbjct 800 GCCTGAACCTGTTCATAAGCGTCCTT 825
> AT5G25780.1 | Symbols: EIF3B-2, EIF3B, ATEIF3B-2 | eukaryotic
translation initiation factor 3B-2 | chr5:8973267-8976869 REVERSE
LENGTH=2409
Length=2409
Score = 1616 bits (875), Expect = 0.0
Identities = 959/1001 (96%), Gaps = 0/1001 (0%)
Strand=Plus/Plus
Query 919 GGTGGTGGAAACCAACCTGCTAAGGTTGCTCTAGTCCAAATCCCGAGCAAGGTGGAGCTG 978
||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1252 GGTGGTGGAAACCAACCAGCCAAGGTTGCTCTAGTCCAAATCCCGAGTAAGGTAGAGCTG 1311
Query 979 AGGCAGAAGAATCTCTTCAGTGTGAGCGACTGCAAGATGTACTGGCAGAGTAGTGGAGAG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AGGCAGAAGAATCTCTTCAGTGTGAGCGACTGCAAGATGTACTGGCAGAGTAGTGGAGAG 1371
Query 1039 TATCTTGCTGTTAAGGTTGATCGATACACAAAAACTAAGAAGAGCACATACTCTGGATTT 1098
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1372 TATCTTGCTGTTAAGGTTGATCGATACACAAAAACTAAGAAGAGTACATACTCTGGATTT 1431
Query 1099 GAGCTTTTCCGTATCAAAGAAAGGGATATTCCCATCGAGGTTCTTGAGCTGGATAACAAG 1158
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1432 GAGCTTTTCCGTATCAAAGAAAGGGATATTCCAATCGAGGTTCTTGAGCTGGATAACAAG 1491
Query 1159 AACGACAAGATCATTGCTTTCGCTTGGGAGCCCAAGGGTCACAGGTTTGCTGTGATTCAT 1218
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1492 AACGATAAGATCATTGCTTTCGCGTGGGAGCCCAAGGGTCACAGGTTTGCTGTGATTCAT 1551
Query 1219 GGTGACCAACCAAGACCAGATGTCAGTTTCTACTCGATGAAGACCGCACAAAATACTGGA 1278
|||||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1552 GGTGACCAGCCAAGACCGGATGTTAGTTTCTACTCGATGAAGACTGCACAAAACACTGGA 1611
Query 1279 AGGGTTTCAAAGCTCGCAACGTTGAAGGCCAAACAAGCCAATGCCCTCTTCTGGTCGCCC 1338
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AGAGTTTCAAAGCTCGCAACTTTGAAGGCCAAACAAGCCAATGCCCTCTTCTGGTCGCCC 1671
Query 1339 ACAGGAAAGTACATCATTCTTGCTGGGTTAAAAGGTTTCAATGGCCAGCTTGAATTTTTC 1398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 ACAGGCAAGTACATCATTCTTGCTGGGTTAAAAGGTTTCAATGGCCAGCTTGAATTTTTC 1731
Query 1399 AACGTGGATGAGCTCGAGACAATGGCAACATCTGAACACTTCATGGCCACGGATATCGAA 1458
|||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 1732 AACGTGGATGAGCTCGAGACAATGGCCACAGCTGAACACTTCATGGCCACAGATATCGAA 1791
Query 1459 TGGGACCCAACTGGAAGGTACGTTGCAACCGCAGTGACATCAGTTCACGAGATGGAGAAT 1518
|||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 1792 TGGGACCCAACTGGAAGGTACGTTGCAACCTCAGTGACAACAGTCCACGAGATGGAGAAT 1851
Query 1519 GGGTTCACCATGTGGTCTTTCAACGGGAATTTGGTTTACCGGATACTGAAGGATCATTTC 1578
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1852 GGGTTCACCATATGGTCTTTCAATGGGAATATGGTTTACCGGATACTGAAGGATCATTTC 1911
Query 1579 TTCCAGTTGGCTTGGCGTCCAAGACCGCCATCATTCTTAACTGCAGAGAAGGAAGAAGAG 1638
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 1912 TTCCAGTTGGCTTGGCGTCCAAGACCGGCATCATTCTTGACTGCGGAGAAGGAAGAAGAG 1971
Query 1639 ATAGCAAAGAACCTGAAGAAGTACAGCAAGAAGTATGAGGCAGAGGATCAGGACGTATCG 1698
|||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 1972 ATAGCAAAGAACCTGAGGAATTACAGCAAGAGGTATGAGGCAGAGGATCAGGACGTGTCG 2031
Query 1699 TTGCTGTTGAGTGAACAAGACAGAGAGAAGAGGAGGGCATTGAAGGAAGAATGGGAGAAA 1758
||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 2032 TTGCTATTGAGTGAACAAGACAGAGAGAAGAGGAGGGCATTGAATGAAGAGTGGCAGAAA 2091
Query 1759 TGGGTGATGCAGTGGAAGTCTCTGCATGAAGAGGAGAAACTCGCGAGAAAAAATCTTCGG 1818
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 2092 TGGGTGATGCAGTGGAAGTCTCTGCATGAAGAGGAGAAACTCGTGAGGCAAAATCTTCGG 2151
Query 1819 GATGGTGAAGTTAGTGATGTGGAAGAAGATGAGTATGAAGCCAAAGAAGTTGAGTTTGAG 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 GATGGTGAAGTTAGTGATGTGGAAGAAGATGAGTATGAAGCCAAAGAAGTTGAGTTTGAG 2211
Query 1879 GATCTTATTGATGTCACTGAGGAAATCGTTCAAGAGTCGAT 1919
|||||||||||||| ||||||||||| |||||||||| |||
Sbjct 2212 GATCTTATTGATGTTACTGAGGAAATTGTTCAAGAGTTGAT 2252
Score = 732 bits (396), Expect = 0.0
Identities = 427/442 (97%), Gaps = 1/442 (0%)
Strand=Plus/Plus
Query 479 TGG-CAGAGAGTTATGTGCAGTGGTCTCCTTTAGGTACATACCTTGTGACACTTCACAAG 537
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 742 TGGACAGAGAGTTATGTGCAGTGGTCTCCAATAGGTACATACCTTGTGACACTTCACAAG 801
Query 538 CAGGGGGCAGCTGTTTGGGGTGGTACTGATACATTCACGCGTCTCATGCGTTATCAGCAT 597
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 802 CAGGGGGCAGCTGTTTGGGGTGGTGCTGATACATTTACGCGTCTCATGCGTTATCAGCAT 861
Query 598 TCTATGGTCAAACTTGTTGATTTCTCGCCAGGTGAGAGATATCTTGTAACTTACCATAGC 657
|| ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 862 TCAATGGTCAAACTAGTTGATTTCTCGCCTGGTGAGAAATATCTTGTAACTTACCATAGC 921
Query 658 CAAGAACCAAGCAATCCGAGAGATGCAAGTAAAGTAGAGATTAAGGTCTTTGATGTGAGA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 CAAGAACCAAGCAATCCGAGAGATGCAAGTAAAGTAGAGATTAAGGTCTTTGATGTGAGA 981
Query 718 ACCGGGAGGATGATGAGAGATTTCAAGGGTAGTGCTGATGAGTTTTCAATTGGAGGACCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 ACCGGGAGGATGATGAGAGATTTCAAGGGTAGTGCTGATGAGTTTTCAATTGGAGGACCT 1041
Query 778 GGTGGTGTTGCTGGCGCCTCTTGGCCTGTTTTCAGATGGGCTGGTGGAAAAGATGATAGA 837
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1042 GGTGGTGTTGCTGGTGCCTCTTGGCCTGTTTTCAGATGGGCTGGCGGAAAAGATGATAAA 1101
Query 838 TACTTTGCCAAGCTTAGCAAAAACACCATCTCTGTCTATGAGACTGAGACTTTCAGCCTA 897
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1102 TACTTTGCCAAGCTGAGCAAAAACACTATCTCTGTCTATGAGACTGAGACTTTCAGCCTA 1161
Query 898 ATAGACAAGACATCCATGAAGG 919
|||||||||| |||||||||||
Sbjct 1162 ATAGACAAGAAATCCATGAAGG 1183
Score = 137 bits (74), Expect = 6e-31
Identities = 82/86 (95%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 351 GCTAGTCATTCGTTCTGGCCCTGATACTGAAGTTTACTGGAATGATGCAAGGCAGAAGAA 410
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 654 GCTAGTCATTCGTTTTGGCCATGATACTGAAGTTTACTGGAATGATGCTAGGCAGAAGAA 713
Query 411 GCCTGAACCTGTTCATAAGCGTCCTT 436
|||||||||||||||||||||| |||
Sbjct 714 GCCTGAACCTGTTCATAAGCGTTCTT 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 186470527131
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5