BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351718
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27740.1 | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase f... 1748 0.0
> AT5G27740.1 | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase
family associated with various cellular activities (AAA) |
chr5:9823679-9827064 FORWARD LENGTH=1412
Length=1412
Score = 1748 bits (946), Expect = 0.0
Identities = 1038/1080 (96%), Gaps = 15/1080 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTGGGTCGACAAGTACAGGCCGAAATCACTCGACAAGGTCATCGTTCATGAAGAT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 153 ATGTTGTGGGTCGACAAGTACAGGCCGAAATCACTCGACAAGGTCATAGTTCATGAAGAT 212
Query 61 ATCGCCCAAAATCTCAAGAAATTGGTTACCGAACAAGATTGTCCGCATTTGCTCTTCTAT 120
||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||| |||
Sbjct 213 ATCGCCCAAAAACTCAAGAAATTGGTTTCCGAGCAAGATTGTCCACATTTGCTCTTTTAT 272
Query 121 GGGCCGTCAGGTTCTGGTAAGAAAACCCTAATCATGGCTCTTCTCAAGCAGATATATGGT 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 273 GGGCCGTCAGGTTCTGGTAAGAAAACCCTAATTATGGCTCTTCTCAAGCAGATATATGGG 332
Query 181 GCCAGTGCAGAGAAGGTGAAAGTGGAGAACAGGGCGTGGAAAGTTGATGCTGGGAGTAGA 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 333 GCCAGTGCAGAGAAGGTGAAAGTGGAGAACAGGGCATGGAAAGTTGATGCTGGGAGTAGA 392
Query 241 ACTATTGATCTGGAGCTCACTACATTATCAAGCACCAATCATGTGGAACTTACTCCAAGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 ACTATTGATCTGGAGCTCACTACATTATCAAGCACCAATCATGTGGAACTTACTCCAAGT 452
Query 301 GATGCAGGCTTTCAGGACCGATATATCGTTCAGGAGATAATTAAAGAAATGGCCAAGAAC 360
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 453 GATGCAGGCTTTCAGGACAGATATATTGTTCAGGAGATAATTAAAGAAATGGCCAAGAAC 512
Query 361 AGACCAATTGACACAAAAGGAAAGAAGGGATATAAGGTGCTGGTATTAAATGAGGTTGAC 420
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 513 AGACCAATTGACACGAAAGGAAAGAAGGGATATAAGGTGTTGGTATTAAATGAGGTTGAC 572
Query 421 AAGCTCTCACGAGAAGCTCAACATTCTCTGCGGAGAACAATGGAGAAATACAGCTCATCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AAGCTCTCACGAGAAGCTCAACATTCTCTGCGGAGAACAATGGAGAAATACAGCTCATCT 632
Query 481 TGCCGTCTCATCTTATGCTGTAACAGCTCTTCGAAGGTTACCGAAGCCATTAAGTCTCGT 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 633 TGCCGTCTCATCTTATGCTGCAACAGCTCTTCGAAGGTTACCGAAGCCATTAAGTCTCGT 692
Query 541 TGTCTTAATGTGCGCATAAATGCACCTTCACAGGAAGAGATAGTGAAAGTGTTGGAGTTC 600
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 693 TGTCTCAATGTGCGCATAAATGCACCTTCGCAGGAAGAGATAGTGAAAGTGTTGGAGTTC 752
Query 601 GTTGCAAAGAAAGAAAGTCTGCAACTGCCCCAGGGTTTTGCTGCTCGAATTGCTGAAAAA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 753 GTTGCAAAGAAAGAAAGTCTGCAACTGCCCCAGGGTTTTGCTGCTCGTATTGCTGAAAAA 812
Query 661 TCAAATCGCAGTCTAAGACGAGCTATTTTGTCACTTGAGACTTGTCGTGTCCAAAACTAT 720
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 813 TCAAATCGCAGTCTAAGAAGAGCTATTTTGTCACTTGAAACTTGTCGTGTCCAAAACTAT 872
Query 721 CCGTTCACAGGTAACCAAGTGATATCTCCCATGGATTGGGAAGAGTATGTTGCTGAAATA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CCGTTCACAGGTAACCAAGTGATATCTCCCATGGATTGGGAAGAGTATGTTGCTGAAATA 932
Query 781 GCAACTGACATGATGAAGGAACAAAGCCCTAAAAAGTTATTTCAGGTGCGTGGAAAGGTG 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GCAACTGACATGATGAAAGAACAAAGCCCTAAAAAGTTATTTCAGGTGCGTGGAAAGGTG 992
Query 841 TACGAATTGCTAGTTAACTGCATTCCACCAGAAGTCATTCTAAAGTTTATGCTTTCCCAG 900
|||||||| |||||||| || |||||||||||||||||||||||| | | |
Sbjct 993 TACGAATTACTAGTTAATTGTATTCCACCAGAAGTCATTCTAAAG---A-G-------A- 1040
Query 901 AGACTTCTTCATGAATTGCTGAAGAAACTGGACTCAGAGCTAAAGCTTGAAGTCTGCCAC 960
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 ---CTCCTTCATGAATTGCTGAAGAAACTGGACTCAGAGCTAAAGCTTGAAGTCTGCCAC 1097
Query 961 TGGGCTGCATATTATGAACATCGGATGCGACTAGGTCAGAAAGCCATATTTCACATAGAA 1020
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1098 TGGGCTGCATATTATGAACATCGGATGCGATTAGGTCAGAAAGCCATATTTCACATAGAA 1157
Query 1021 GCATTTGTGGCCAAGTTTATGAGCATATATAAAAACTTCCTCATTTCAACATTTGGGTAG 1080
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1158 GCATTTGTGGCCAAGTTTATGAGCATATACAAAAACTTCCTCATTTCAACGTTTGGGTAG 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5