BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351743
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27460.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2065 0.0
> AT5G27460.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:9693262-9694840 REVERSE LENGTH=1501
Length=1501
Score = 2065 bits (1118), Expect = 0.0
Identities = 1352/1464 (92%), Gaps = 20/1464 (1%)
Strand=Plus/Plus
Query 10 CGTTGC-GTTGCGAAGACGAGGCTCACCACCACTGGCGTAG---CAAGGCTCGTGTCTAC 65
|||||| ||||||||||||||| ||| |||||| ||||||| |||||||||||||| |
Sbjct 40 CGTTGCGGTTGCGAAGACGAGGTTCAACACCACCGGCGTAGTATCAAGGCTCGTGTCTTC 99
Query 66 TCTTGGAGATTGTTCGGATACGTCATCACTCGCACATCGGAATAGCTTGAAGGAGATTCT 125
|||| |||| ||||||| ||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 100 ACTTGCAGATGGTTCGGACACGTCATCAGTCGCAAATCGGAATAGCTTGAAGGAGATACT 159
Query 126 GAGAAAGAACGGTCCACGCCGCAGTGTTACCTCTCTGCTTCAGGAACGGATCGATTCGGG 185
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 160 GAGAAAGAACGGTCCACGACGCAGCGTTACCTCTCTGCTTCAGGAACGGATCGATTCGGG 219
Query 186 TCACGCCGTCGCGTTATCGGAGCTCCGATTCATCTCCAAGCGTCTCATTAGATCTAATCG 245
||| |||||| | ||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 220 TCATGCCGTCTCTTTATCGGAGCTCCGATTGATTTCCAAGCGTCTCATTAGATCAAATCG 279
Query 246 CTACGATCTCGCTCTCCAGATGATGGAGTGGATGGAGAATCAAAAAGAGATTCAATTTAG 305
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 280 TTACGATCTCGCTCTCCAGATGATGGAGTGGATGGAGAATCAAAAAGATATTGAATTTAG 339
Query 306 TGTTGATGACATTTCTCTTAGATTAGAGTTAATCATCAAAACTCATGGCTTGAAACAAGC 365
|||| |||||||| |||||||||| || || ||||||||||||||||||||||||||||
Sbjct 340 TGTTTATGACATTGCTCTTAGATTGGATTTGATCATCAAAACTCATGGCTTGAAACAAGG 399
Query 366 AGAGGAGTATTTTGAGAAGCTACTAAATAGCTCTGCCTCGT-TGAGAGTAGCGAAATCGG 424
||||||||||||||||||||| ||| |||| |||| || | ||||||||||||||||||
Sbjct 400 AGAGGAGTATTTTGAGAAGCTGCTACATAGTTCTGTGTC-TATGAGAGTAGCGAAATCGG 458
Query 425 CTTATCTTCCTCTTCTTCGCAG-TTATGTGAAGAAGAAAATGGTTAAAGAAGGGGAAGTT 483
|||||||||| |||||||| | |||||||||||| |||||||||||||||| ||||| |
Sbjct 459 CTTATCTTCCGCTTCTTCG-TGCTTATGTGAAGAATAAAATGGTTAAAGAAGCGGAAGCT 517
Query 484 TTTATGGAGAAGTTGAATGGATTGGGGTTTCTTGTTACTCCACACCCGTTTAACGAAATG 543
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 518 CTAATGGAGAAGTTGAATGGATTAGGGTTTCTTGTTACTCCACACCCGTTTAACGAAATG 577
Query 544 ATGAAGCTTTATGAAGCTAGTGGTCAGTATGAGAAAGTTGTTATGGTTGTTTCGATGATG 603
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 578 ATGAAGCTTTATGAAGCTAGTGGTCAGTATGAGAAAGTAGTTATGGTTGTTTCGATGATG 637
Query 604 AAAGTGAATAAGATACCGAGAAATGTTCTTTCGTATAATCTTTGGATGAATGCTTGTTGT 663
|||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 638 AAAGGGAATAAGATACCAAGAAACGTTCTTTCGTATAATCTTTGGATGAATGCATGTTGT 697
Query 664 CAAGTGTCTGGTGTTGCGGCTGTGGAAACGGTTTATAAGGAAATGGTTGGTGATAAGAGT 723
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GAAGTGTCTGGAGTTGCGGCTGTGGAAACGGTTTATAAGGAAATGGTTGGTGATAAGAGT 757
Query 724 ATTGAAGTTGGGTGGAGTTCGTTGTGTACTTTGGCTAATGTTTATATTAAGGGTCGGTTT 783
||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 758 GTTGAAGTTGGGTGGAGTTCGTTGTGTACTTTAGCTAATGTTTATATTAAGAGT-GGTTT 816
Query 784 -GATGAGAAGGCTAAGTTGGTTCTTGAGAATGCGGAAAAGATGTTGAATAGAAGTAATAG 842
||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 817 TGATGAGAAGGCTAGGTTGGTGCTTGAGGATGCGGAAAAGATGTTGAATAGAAGTAATAG 876
Query 843 GCTTGGATATTTCTTCCTTATCACGCTTTATGCGTCTTTAGGGAATAAGGAAGGAGTTGT 902
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GCTTGGATATTTCTTTCTTATCACGCTTTATGCGTCTTTAGGGAATAAGGAAGGAGTTGT 936
Query 903 TCGTTTGTGGGAAGCTTCTAAATCGGTTTGTGGTAGGATTAGTTGTGCGAATTACATATG 962
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 937 TCGTTTGTGGGAAGTTTCTAAATCGGTTTGTGGTAGGATTAGTTGTGTGAACTACATATG 996
Query 963 TGTATTGTCGTCTTTGGTGAAAA-TAGGTGGTCTTGAAGAGGCTGAAAGGGTGTTTAGTG 1021
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 997 TGTATTGTCGTCTTTGGTGAAAACT-GGTGATCTTGAAGAGGCTGAAAGGGTGTTTAGTG 1055
Query 1022 AGTGGGAGGCTGAATGCTTTAACTATGATGTTAGGGTCTCCAATGTTCTTTTGGGTGCTT 1081
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AGTGGGAGGCTCAATGTTTTAACTATGATGTTAGGGTCTCCAATGTTCTTTTGGGTGCTT 1115
Query 1082 ATGTGCGTAATGGACAAATCCGGAAAGCTGAGTCATTGCACGCCCGTGTATTGGATCGAG 1141
|||||||||||||| ||||||||||||| ||||||||||| | |||| ||||| |||
Sbjct 1116 ATGTGCGTAATGGAGAAATCCGGAAAGCCGAGTCATTGCATGGTTGTGTGTTGGAGAGAG 1175
Query 1142 GAGGTGA-TCCAAACTACAAGACTTGGGAAATCCTAATGGAGGGATGGGTGAAATGTCA- 1199
||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 1176 GAGGT-ACTCCAAACTACAAGACCTGGGAAATCTTAATGGAGGGATGGGTGAAATGTGAG 1234
Query 1200 AAGTATGGAGAAAGCCATTGTTGCTATGCACCAAGCGTTTGAACTAATGAAG-GGATGCC 1258
|| ||||||||||||||||| |||||||||||||| ||||| |||||||| | || || |
Sbjct 1235 AA-TATGGAGAAAGCCATTGATGCTATGCACCAAGTGTTTGTACTAATGAGGCGG-TGTC 1292
Query 1259 ATTGGAGACCATCGCAAAACATTGTCATGGCGATTGCCAAGTACTTTGAGAAAGAGGGGA 1318
||||||| ||||| || ||||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 1293 ATTGGAGGCCATCCCATAACATCGTCATGGCGATTGCCGAGTACTTTGAGAAAGAGGAGA 1352
Query 1319 AAATTGAAGAAGCAAACA-CATATATTAGAGATTTGCATCATCTTGGTCTTGCAAGCTTA 1377
||||||||||||||| | ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1353 AAATTGAAGAAGCAA-CTGCATATGTTAGAGATTTGCATCGTCTTGGTCTTGCAAGCTTA 1411
Query 1378 CCGTTATATAGATTGTTACTTAGAATGCATGAACATGCCCAAAGACCAGCTTTTGACATC 1437
|| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 1412 CCATTATACAGATTGTTACTTAGAATGCATGAACATGCCAAAAGACCAGCTTATGATATC 1471
Query 1438 TATGAAATGATGAAGTTGGACAAA 1461
||||||||||||||||||||||||
Sbjct 1472 TATGAAATGATGAAGTTGGACAAA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5