BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351756
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27320.1 | Symbols: ATGID1C, GID1C | alpha/beta-Hydrolases s... 1624 0.0
AT3G05120.1 | Symbols: ATGID1A, GID1A | alpha/beta-Hydrolases s... 979 0.0
> AT5G27320.1 | Symbols: ATGID1C, GID1C | alpha/beta-Hydrolases
superfamily protein | chr5:9629087-9631210 FORWARD LENGTH=1666
Length=1666
Score = 1624 bits (879), Expect = 0.0
Identities = 984/1036 (95%), Gaps = 2/1036 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGGAAGTGAAGAAGTTAATCTTATTGAGAGCAAGACAGTGGTGCCTCTCAATACA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 168 ATGGCTGGAAGTGAAGAAGTTAATCTTATTGAGAGCAAGACAGTGGTTCCTCTCAATACA 227
Query 61 TGGGTTTTGATATCCAACTTTAAGCTAGCCTACAATCTCCTGCGCCGCCCTGACGGAACT 120
|||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 228 TGGGTTCTAATATCCAACTTTAAGCTAGCTTACAATCTCCTGCGTCGCCCTGACGGAACT 287
Query 121 TTTAACCGCCACCTTGCGGAGTTTCTAGACCGGAAAGTCCCTGCAAACGCCAACCCTGTT 180
|||||||| || || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 288 TTTAACCGTCATCTCGCAGAGTTTCTAGACCGGAAAGTCCCTGCAAATGCCAACCCTGTT 347
Query 181 AATGGGGTCTTCTCGTTCGATGTTATCATCGATCGCCAAACCAATATGCTTAGCCGAGTA 240
|||||||||||||| || ||||| ||||||||||||||||| ||| |||||||| ||||
Sbjct 348 AATGGGGTCTTCTCTTTTGATGTGATCATCGATCGCCAAACTAATTTGCTTAGCAGAGTT 407
Query 241 TACAGACCGGCTAATGCTGGTC-CCCCACCTAGTATTACCGATCTTCAGAATCCCGTTGA 299
|||||||| ||| ||||||| | | |||| |||||||| ||||| |||||||| |||||
Sbjct 408 TACAGACCAGCTGATGCTGG-CACTTCACCAAGTATTACTGATCTACAGAATCCTGTTGA 466
Query 300 TGGTGAAATAGTGCCTGTTATTGTCTTCTTTCATGGTGGAAGCTTTGCACATTCTTCTGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TGGTGAAATAGTGCCTGTTATTGTCTTCTTTCATGGTGGAAGCTTTGCACATTCTTCTGC 526
Query 360 AAACAGTGCTATTTATGATACTCTTTGCCGTAGGCTTGTTGGTTTGTGTGGTGCTGTTGT 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 527 AAACAGTGCTATTTATGATACTCTTTGTCGTAGGCTTGTTGGTTTGTGTGGTGCTGTTGT 586
Query 420 TGTCTCTGTGAACTATCGTCGTGCACCAGAGAATCGATACCCTTGTGCTTATGATGATGG 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TGTCTCTGTGAATTATCGTCGTGCACCAGAGAATCGATACCCTTGTGCTTATGATGATGG 646
Query 480 CTGGGCTGTTTTGAATTGGGTCAACTCTAGTTCTTGGCTTAAAAGCAAGAAAGATTCAAA 539
|||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 647 ATGGGCTGTTTTGAAATGGGTCAACTCGAGTTCTTGGCTTAGAAGCAAGAAAGACTCAAA 706
Query 540 GGTTCATATTTTCTTGGCGGGTGATAGCTCTGGGGGTAACATTGTGCATAATGTCGCACT 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 707 GGTTCGTATTTTCTTGGCGGGTGATAGCTCTGGGGGTAACATTGTGCATAATGTCGCGGT 766
Query 600 AAGAGCGGTTGAGTCGGGGATCAATGTTTTGGGGAACATTTTGCTTAACCCTATGTTTGG 659
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 767 AAGAGCGGTTGAGTCAAGGATCGATGTTTTGGGGAACATTTTGCTTAACCCTATGTTTGG 826
Query 660 AGGGACCGAGAGAACGGAATCTGAGAAACGTTTGGATGGGAAATACTTTGTGACGGTTAG 719
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 827 AGGGACCGAAAGAACGGAATCTGAGAAACGTTTGGATGGGAAGTACTTTGTTACGGTTAG 886
Query 720 AGACCGCGATTGGTATTGGAGAGCGTTTCTTCCGGAGGGTGAAGACAGAGAGCATCCAGC 779
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 887 AGACCGAGATTGGTATTGGAGAGCGTTTCTTCCTGAGGGTGAAGACAGAGAGCATCCAGC 946
Query 780 GTGTAGCCCGTTTGGCCCGAGAAGCAAGAGTTTAGAAGGGTTGAGTTTCCCCAAGAGTCT 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 947 GTGTAGCCCGTTTGGCCCGAGAAGCAAGAGTCTAGAAGGGTTGAGTTTCCCCAAGAGTCT 1006
Query 840 GGTCGTTGTAGCGGGTTTAGATTTGATTCAAGATTGGCAATTGAAGTACGCGGAAGGACT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1007 TGTCGTTGTAGCGGGTTTAGATTTGATTCAAGATTGGCAATTGAAGTACGCGGAAGGGCT 1066
Query 900 CAAGAAAGCGGGTCAAGATGTGAAGCTTCTCTACTTGGAGCAAGCCACCATTGGCTTCTA 959
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1067 CAAGAAAGCGGGTCAAGAGGTGAAGCTTCTTTACTTGGAGCAAGCCACTATTGGCTTCTA 1126
Query 960 CTTATTGCCTAACAACAATCACTTCCATACCGTTATGGACGAGATAGCTGCATTTGTAAA 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1127 CTTATTGCCTAACAACAATCACTTCCATACCGTTATGGATGAGATAGCTGCATTTGTAAA 1186
Query 1020 CGCAGAATGCCAATGA 1035
||||||||||||||||
Sbjct 1187 CGCAGAATGCCAATGA 1202
> AT3G05120.1 | Symbols: ATGID1A, GID1A | alpha/beta-Hydrolases
superfamily protein | chr3:1430471-1432778 FORWARD LENGTH=1740
Length=1740
Score = 979 bits (530), Expect = 0.0
Identities = 882/1049 (84%), Gaps = 36/1049 (3%)
Strand=Plus/Plus
Query 1 ATGGCTG-GAAGTGAAGAAGTTAATCTTATTGAGAGCAAG-ACAGTGGTGCCTCTCAATA 58
||||||| | || || ||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 212 ATGGCTGCG-AGCGATGAAGTTAATCTTATTGAGAGC-AGAACAGTGGTTCCTCTCAATA 269
Query 59 CATGGGTTTTGATATCCAACTT-TAAGCTAGCCTACAATCTCCTGCGCCGCCCTGACGGA 117
|||||||||| ||||||||||| ||| ||||||||||| |||| || |||||||| |||
Sbjct 270 CATGGGTTTTAATATCCAACTTCAAAG-TAGCCTACAATATCCTTCGTCGCCCTGATGGA 328
Query 118 ACTTTTAACCGCCACCTT-GCGGAGTTTCTAGACCGGAAAGTCCCTGCAAACGCCAACCC 176
|| |||||||| || ||| || |||| ||||||||| |||||| ||||||||||||| ||
Sbjct 329 ACCTTTAACCGACA-CTTAGCTGAGTATCTAGACCGTAAAGTCACTGCAAACGCCAATCC 387
Query 177 TGTTAATGGGGTCTTCTCGTTCGATGT-TATCATCGATCGCCA-AACCAATATGCTTAGC 234
||| ||||||| |||||||||||||| | | || ||||| || | |||| | || |||
Sbjct 388 GGTTGATGGGGTTTTCTCGTTCGATGTCT-TGATTGATCG-CAGGATCAATCTTCTAAGC 445
Query 235 CGAGTATACAGACCGGCTAATGCTGGTC-----C-CCCACCTAGTATTACCGATCTTC-A 287
|||| || ||||| ||| |||| | || | || ||||||||| |||| || |
Sbjct 446 AGAGTCTATAGACCAGCTTATGCAGATCAAGAGCAACCTCCTAGTATTTTAGATC-TCGA 504
Query 288 GAATCCCGTTGATGGTGAAATAGTGCCTGTTAT-TGTCTTCTTTCATGGTGGAAGCTTTG 346
||| || |||||||| || || || |||||||| | | ||||| ||||| || |||||||
Sbjct 505 GAAGCCTGTTGATGGCGACATTGTCCCTGTTATAT-TGTTCTTCCATGGAGGTAGCTTTG 563
Query 347 CACATTCTTCTGCAAACAGTGCTATTTATGATACTCTTTGCCGTAGGCTTGTTGGTTTGT 406
| |||||||||||||||||||| || || ||||||||||| || ||||||||||||||||
Sbjct 564 CTCATTCTTCTGCAAACAGTGCCATCTACGATACTCTTTGTCGCAGGCTTGTTGGTTTGT 623
Query 407 G-TGGTGCTGTTGTTGTCTCTGTGAACTATCGTCGTGCACCAGAGAATCGATACCCTTGT 465
| ||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 624 GCAAGTG-TGTTGTTGTCTCTGTGAATTATCGGCGTGCACCAGAGAATCCATACCCTTGT 682
Query 466 GCTTATGATGATGGCTGGGCTG-TTTTGAATTGGGTCAACTCTAGTTCTTGGCTTAAAAG 524
|||||||||||||| ||| || | || |||||||| ||||| || ||||||||||||
Sbjct 683 GCTTATGATGATGGTTGGATTGCTCTT-AATTGGGTTAACTCGAGATCTTGGCTTAAATC 741
Query 525 CAAGAAAGATTCAAAGGTTCATATTTTCTTGGCGGGTGATAGCTCTGGGGGTAACATTGT 584
||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||| |
Sbjct 742 CAAGAAAGACTCAAAGGTCCATATTTTCTTGGCTGGTGATAGCTCTGGAGGTAACATCGC 801
Query 585 GCATAATGTCGCACTAAGAGCGGTTGAGTCGGGGATCAATGTTTTGGGGAACATTTTGCT 644
||||||||| || ||||||||| ||| ||||| ||| ||||||||||||||||| ||||
Sbjct 802 GCATAATGTGGCTTTAAGAGCGGGTGAATCGGGAATCGATGTTTTGGGGAACATTCTGCT 861
Query 645 TAACCCTATGTTTGGAGGGACCGAGAGAACGGAATCTGAGAAACGTTTGGATGGGAAATA 704
|| ||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 862 GAATCCTATGTTTGGTGGGAATGAGAGAACGGAGTCTGAGAAAAGTTTGGATGGGAAATA 921
Query 705 CTTTGTGACGGTTAGAGACCGCGATTGGTATTGGAGAGCGTTTCTT-CCGGAGGGTGAAG 763
|||||||||||||||||||||||||||||| |||| ||||||| || || ||||| ||||
Sbjct 922 CTTTGTGACGGTTAGAGACCGCGATTGGTACTGGAAAGCGTTT-TTACCCGAGGGAGAAG 980
Query 764 ACAGAGAGCATCCAGCGTGTAGCCCGTTTGGCCCGAGAAGCAAGAGTTTAGAAGG-GTTG 822
| ||||||||||||||||||| |||||| |||||||| | || || |||||||| || |
Sbjct 981 ATAGAGAGCATCCAGCGTGTAATCCGTTTAGCCCGAGAGGGAAAAGCTTAGAAGGAGT-G 1039
Query 823 AGTTTCCCCAAGAGTCTGGTCGTTGTAGCGGGTTTAGATTTGATTCA-AGATTGGCAATT 881
||||||||||||||||| || ||||| |||||||| ||||||||| | ||||||||| ||
Sbjct 1040 AGTTTCCCCAAGAGTCTTGTGGTTGTCGCGGGTTTGGATTTGATT-AGAGATTGGCAGTT 1098
Query 882 GA-AGTACGCGGAAGGACTCAAGAAAGCGGGTCAAGATGTGAAGCTTCT-CTACTTGGAG 939
| | ||||||||||| |||||||||||||||||||| || |||||| | | | || |||
Sbjct 1099 GGCA-TACGCGGAAGGGCTCAAGAAAGCGGGTCAAGAGGTTAAGCTTATGC-ATTTAGAG 1156
Query 940 CAAGCCACCATTGGCTTCTACTTATTGCCTAACAACAATCACTTCCATACCGTTATGGAC 999
|||| || |||| || ||| | |||||||| |||||||| ||||||| ||||||||
Sbjct 1157 AAAGCAACTGTTGGGTTTTACCTCTTGCCTAATAACAATCATTTCCATAATGTTATGGAT 1216
Query 1000 GAGATAGCTGCATTTGTAAACGCAGAATG 1028
||||| | || ||||||||||| |||||
Sbjct 1217 GAGATTTCGGCGTTTGTAAACGCGGAATG 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5