BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351774

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27200.1 | Symbols: ACP5 | acyl carrier protein 5 | chr5:957...   610    3e-174


> AT5G27200.1 | Symbols: ACP5 | acyl carrier protein 5 | chr5:9571185-9571989 
FORWARD LENGTH=420
Length=420

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 394/424 (93%), Gaps = 8/424 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGACAAGTTTCTGCTCCTCCATCTCCATGCAAGCTCCTAAATCGGGTACAACAACA  60
            ||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||
Sbjct  1    ATGGCGACAAGTTTCTGCTCCTCCATCTCCATGCAAGCTCCTTTCTCGGCTACAACAACA  60

Query  61   AGGTTCAGTCTTC-AGAAACCGGTTTTGATTTTCAACAATGGAAAGAC---TAATCTCTC  116
            |||||| ||| || | |||| || |  |||||||||||||| ||||||   |||||||||
Sbjct  61   AGGTTCTGTC-TCAACAAACAGGCTACGATTTTCAACAATGAAAAGACTAATAATCTCTC  119

Query  117  ATTCAGCTTGCATCGACGTTCGATGCCTGCTCGTCTCGCAGTTTCTTGTGGAGCCAAGCA  176
             |||||| |  | ||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct  120  CTTCAGCCT--A-CGACGTTTGATGCCTGCTCGTCTCGCAGTTTCTTGTGCAGTCAAGCA  176

Query  177  AGAGACAGTGGAGAAAGTGTCTGAGATTGTGAAGAAGCAATTGTCGCTCACCGATGATCA  236
            ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  177  AGAGACAGTAGAGAAAGTGTCTGAGATTGTCAAGAAGCAATTGTCGCTCACCGATGATCA  236

Query  237  AAAAGTCACCGCGGGAACCAAATTTACCGAACTTGGAGCTGATTCTCTCGACACGGTTGA  296
            ||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct  237  AAAAGTCACTGCCGGAACTAAATTTACCGAGCTTGGAGCTGATTCTCTCGACACGGTTGA  296

Query  297  GATAGTGATGGGTTTGGAGGAAGAGTTCGGGATAACAATGGCGGAAGAGAGAGCAAAGGA  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GATAGTGATGGGTTTGGAGGAAGAGTTCGGGATAACAATGGCGGAAGAGAGAGCAAAGGA  356

Query  357  GATTGCAACAGTCCAACAGGCTGCTGAACTCATTGAAGAACTCGTCCAAGAGAAGACTGC  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  357  GATTGCAACAGTCCAACAGGCTGCTGAACTCATTGAAGAACTCGTCCAAGAGAAGACTGC  416

Query  417  TTAG  420
            ||||
Sbjct  417  TTAG  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5