BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351787
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28000.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 710 0.0
AT5G28010.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 497 3e-140
> AT5G28000.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr5:10020679-10021251 FORWARD
LENGTH=495
Length=495
Score = 710 bits (384), Expect = 0.0
Identities = 459/496 (93%), Gaps = 2/496 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGAGACTACAAAGGAGATGCCAAAGTCTTCTCTATGGGGAGAGGTTGAGGTAGAA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGAGACTACAAAGGAGATGCCAAAATCTTCTCTATGGGGAGAGGTTGAGGTAGAA 60
Query 61 GTTGACATAAAAGCTCCTGCTGCGAAATTCTACCATGTGTATGCAGGAAGACCAGACCAT 120
|||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 61 GTTGACATCAAATCTCCTGCTGAAAAATTCTACCAAGTGTATGTAGGAAGACCAGACCAT 120
Query 121 GTCGCTAAAGCAACTTCTAGCAAAGTGCAGGCATGTGATCTGCTCGAAGGGGAATGGGGC 180
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 121 GTCGCTAAAGCCACTTCTAGCAAAGTGCAAGCATGTGATCTGCTTGAAGGGGAATGGGGC 180
Query 181 ATCGTAGGCAGTATTGTCAACTGGAACTACGTTTATGCGGGGAAGGCAAAGGTGGCAAAA 240
| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACCATAAGCAGTATTGTCAACTGGAACTACGTTTATGCGGGCAAGGCAAAGGTGGCAAAA 240
Query 241 GAGAGAATCGAATTAGTGGAACCAGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGA 300
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAGAATCGAATTAGTAGAACCGGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGA 300
Query 301 GATGTTTTGGCCGTTTACAAGAGCTTCTTGATCACGATT-CGGGTGACCCCGAAGGAAGG 359
||||||||||| || ||||||| |||||| ||||||||| | | ||||||||||||||||
Sbjct 301 GATGTTTTGGCTGTGTACAAGAACTTCTTTATCACGATTTCAG-TGACCCCGAAGGAAGG 359
Query 360 AGAGGTTGGAAGTGTGGTGAAATGGCATCTTGAGTACGAGAAAAATGATGAGAATGTGCC 419
|| |||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 360 AGGGGTTGGAAGTGTGGCGAAATGGCACCTTGAGTACGAGAAGAATGATGTGAATGTGCC 419
Query 420 TCACCCTTATAATTTTCTTCCTTTCTTAGCTGAGATGACCAAAGAGATTGACGAACACCT 479
| |||| | |||||||| |||||||||||||||||||| |||||||| || ||||||||
Sbjct 420 TGACCCCGAGAATTTTCTCCCTTTCTTAGCTGAGATGACTAAAGAGATCGATGAACACCT 479
Query 480 CTTATCTGAGGAATAG 495
|||||| |||||||||
Sbjct 480 CTTATCCGAGGAATAG 495
> AT5G28010.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr5:10024813-10025382 FORWARD
LENGTH=501
Length=501
Score = 497 bits (269), Expect = 3e-140
Identities = 409/477 (86%), Gaps = 8/477 (2%)
Strand=Plus/Plus
Query 21 GATGCCAAAGTCTTCTCTATGGGGAGAGGTTGAGGTAGAAGTTGACATAAAAGCTCCTGC 80
|||||| ||||||||||| | ||| || |||||||||||||||| || |||||||| ||
Sbjct 27 GATGCCCAAGTCTTCTCTTTTAGGAAAGCTTGAGGTAGAAGTTGAGATCAAAGCTCCCGC 86
Query 81 TGCGAAATTCTACCATGTGTATGCAGGAAGACCAGACCATGTCGCTAAAGCAACTTCTAG 140
|||| ||||||||| | ||||| ||||||||| ||||||| |||||||| ||| || |
Sbjct 87 GGCGATATTCTACCACATCTATGCTGGAAGACCACACCATGTTGCTAAAGCCACTCCTCG 146
Query 141 CAAAGTGCAGGCATGTGATCTGC-TCGAAGGGGAATGGGGCATCGTAGGCAGTATTGTCA 199
||| ||||| |||||||||| | | || ||||||||||||| ||||||||| || |||
Sbjct 147 CAACGTGCAATCATGTGATCTCCAT-GATGGGGAATGGGGCACCGTAGGCAGCATCGTCT 205
Query 200 ACTGGAACTACGTTTATGCGGGGA-AGGCAAAGGTGGCAAAAGAGAGAATCGAATTAGTG 258
| |||||||||||| ||| |||| | |||||||| ||||||||||| || ||||||||
Sbjct 206 ATTGGAACTACGTTCATG-AGGGACAAGCAAAGGTTGCAAAAGAGAGGATTGAATTAGTA 264
Query 259 GAACCAGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGAGATGTTTTGGCCGTTTAC 318
|| |||||||||||||| || |||||||||||||| |||||||||||| |||| | |||
Sbjct 265 GAGCCAGAGAAGAAACTGATCAAGTTTAGGGTCATTGAAGGAGATGTTATGGCTGAGTAC 324
Query 319 AAGAGCTTCTTGATCACGATTCGGGTGACCCCGAAGGAAGGAGAGG-TTGGAAGTGTGGT 377
||||| |||||||||||||||| |||||||||||||||||||| || ||||||||| ||
Sbjct 325 AAGAGTTTCTTGATCACGATTCAGGTGACCCCGAAGGAAGGAG-GGACTGGAAGTGTTGT 383
Query 378 GAAATGGCATC-TTGAGTACGAGAAAAATGATGAGAATGTGCCTCACCCTTATAATTTTC 436
||||||||| | ||||||| ||||| | ||||||||| |||||||||||| | ||| |||
Sbjct 384 GAAATGGCA-CATTGAGTATGAGAAGATTGATGAGAACGTGCCTCACCCTGAGAATCTTC 442
Query 437 TTCCTTTCTTAGCTGAGATGACCAAAGAGATTGACGAACACCTCTTATCTGAGGAAT 493
| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 443 TCCCTTTCTTCGCCGAGATGACCAAAGAGATTGACGAACACCTCTTATCCGAGGAAT 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5