BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351806
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superf... 857 0.0
AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superf... 745 0.0
> AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10162783-10163943 FORWARD LENGTH=1059
Length=1059
Score = 857 bits (464), Expect = 0.0
Identities = 653/744 (88%), Gaps = 13/744 (2%)
Strand=Plus/Plus
Query 82 GTGGCCTTACTTTACACAACGTTCTCTAGAAAGGAAGAGACGCTGACGTTTTTGTCGTTG 141
||| |||||||||||| ||| ||||||||||||||| ||| ||||||||||||||| |
Sbjct 61 GTGTCCTTACTTTACAAAACTTTCTCTAGAAAGGAAAAGAAGCTGACGTTTTTGTC---G 117
Query 142 CTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCATACTATGCGAAA 201
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 118 CTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTACTATCCGAAA 177
Query 202 CTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATTTCTAATGAGCTCACTGTGGCG 261
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 178 CTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGCTCACCGTGGCG 237
Query 262 AGATTGCACCTTAAAACCCATAAAACCTTATTTCATGTCTGCTTACAGTTTTCC-GATAA 320
|| |||| ||||||||| | ||| || ||||||||||||||| ||||| || |||||
Sbjct 238 CGAGTGCAACTTAAAACCTACGAAAGTTTTTTTCATGTCTGCTTAAAGTTT-CCTGATAA 296
Query 321 ACCTTGTTCATCCTTGTTTGTCCTCTGGATAAAACCTGGTCAAACCCTAACCAACCAACT 380
|||| | |||| |||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 297 ACCTAATCCATCAATGTTCACCCTCTGGATAAAACCTGGTCAAATCTTAACCAACCAACT 356
Query 381 CGAGAAGAAGGAGAGATCTATC-GGAGATACTCGGTTGGTACCAATACCTTCTTCCTATT 439
|||||||| ||||| |||| | |||| |||||||||||||| |||||||||||| ||||
Sbjct 357 TGAGAAGAACGAGAGGTCTA-CAGGAGCTACTCGGTTGGTACAAATACCTTCTTCATATT 415
Query 440 GTTCTACGGTACCATTTTACACCA-TTTCAGTTGGTTCAGAAGTGTACGGACTCAAACAA 498
|||||| |||||| |||| | | |||| |||||||| ||||| |||||||||| |||
Sbjct 416 GTTCTATTGTACCACATTAC-CTAATTTCTGTTGGTTCCGAAGTATACGGACTCAGCCAA 474
Query 499 TATAATGATCCATCCTCCATGATGTGGGTCCGTAATAAGAAGAACTTGTTTTGGCGTAAA 558
| |||||||| ||||||| |||| |||||||| ||| || | ||||||||| ||||
Sbjct 475 CACAATGATCCGTCCTCCAACATGTTTGTCCGTAACAAGGAGGATTTGTTTTGGTGTAAT 534
Query 559 GCCCCCAACATGACTGTAGCTCGAGCGAAAGCCATTG--CACGCGTCCACAATGGGAAAA 616
||||| ||||||||||||||||||||||||||||| | ||||| | |||||||||||
Sbjct 535 GCCCCAAACATGACTGTAGCTCGAGCGAAAGCCATCGGGCACGCCT--ACAATGGGAAAC 592
Query 617 TATATGTAATGGGAGGTTGCAGGGCTGATGAATCCGCGAATTGGGGTGAGGTTTTCGACA 676
||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 593 TATATGTCATGGGAGGTTGCAGGGATGATGAATCCGTGAATTGGGGTGAGGTTTTTGACC 652
Query 677 TAATGACTCAAACTTGGGAACCTTTACCTGACCCTGGCGCTGAGCTCCGCTTTTCTTCAA 736
|| |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 653 CAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGCTCTGAGCTCCGTTTTTCTTCAA 712
Query 737 TTAGAAAAATAGAAGTGTTCCAAGGAAAGCTTTACGTTAGAAGCAATGAGAAGAAAGACT 796
||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||| |||||
Sbjct 713 TTAGAAAAATAGATGTGTTCCAAGAAAAGCTTTACGTTAGCAGCAACGAGAAGATAGACT 772
Query 797 CTGTTTATGATCCAAAAGAAGGTA 820
||||||||||||||||||||||||
Sbjct 773 CTGTTTATGATCCAAAAGAAGGTA 796
> AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10137926-10139013 FORWARD LENGTH=975
Length=975
Score = 745 bits (403), Expect = 0.0
Identities = 605/700 (86%), Gaps = 23/700 (3%)
Strand=Plus/Plus
Query 128 CGTTTTTGTCGTTGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGAT 187
|||||||||| || |||||||||||| |||||| |||||||||||||||||||||||
Sbjct 26 CGTTTTTGTC---ACTACCTGATGAAATCATCTTGAGCTGTTTAGCCCGCATATCGAGAT 82
Query 188 CATACTATGCGAAACTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATTTCTAATG 247
| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 83 CGTACTATCCGAAACTCTCCCTAGTTTGCAAGACCTTCCGCACTCTCCTCATATCTAATG 142
Query 248 AGCTCACTGTGGCGAGATTGCACCTTAAAACCCATAAAACCTTATT-TCATGTCTGCTTA 306
|||||| ||||||| |||||||||| ||||||||| ||||||| || |||||||||||||
Sbjct 143 AGCTCATTGTGGCGCGATTGCACCTCAAAACCCATGAAACCTT-TTGTCATGTCTGCTTA 201
Query 307 CAGTTTTCC-GATAAACCTTGTTCATCCTTGTTTGTCCTCTGGATAAAACCTGGTCA-AA 364
|| ||||| ||||||||| | | || |||| ||||||||||||||||||| | ||
Sbjct 202 AAG-TTTCCTGATAAACCTAATCCGTCAATGTTCACCCTCTGGATAAAACCTGGT-ACAA 259
Query 365 CCCTAACCAACCAACTCGAGAAGAAGGAGAGATCTATC-GGAGATACTCGGTTGGTACCA 423
| ||||||||||||| |||||||| |||| |||| | |||||||||||||||||| |
Sbjct 260 TCTTAACCAACCAACTTGAGAAGAACAAGAGGTCTA-CAAGAGATACTCGGTTGGTACAA 318
Query 424 ATACCTTCTTCCTATTGTTCTACGGTACCATTTTACAC-CATT-TCAGTTGGTTCAGAAG 481
||||||||||| |||| || || ||||| |||||| | | || | |||||||| ||||
Sbjct 319 ATACCTTCTTCATATTATTATAATGTACCGTTTTAC-CTCGTTAT-GGTTGGTTCCGAAG 376
Query 482 TGTACGGACTCAAACAATATAATGATCCATCCTCCATGATGTGGGTCCGTAATAA-GAAG 540
| |||||||||| ||| |||||||| ||||||| |||| ||||||||||| | |
Sbjct 377 TATACGGACTCAGCCAACGCAATGATCCGTCCTCCAACATGTTTGTCCGTAATAAGGGGG 436
Query 541 A-ACTTGTTTTGGCGTAAAGCCCCCAACATGACTGTAGCTCGAGCGAAAGCCATTGCACG 599
| | || |||| | |||||||||| |||||||||||||||||||| ||||||| |||| |
Sbjct 437 ATA-TT-TTTTTGTGTAAAGCCCCAAACATGACTGTAGCTCGAGCTAAAGCCAGTGCA-G 493
Query 600 -CGTCCACAATGGGAAAATATATGTAATGGGAGGTTGCAGGGCTGATGAATCCGCGAATT 658
||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 494 TTGTCTTCAATGGGAAAATATATGTGATGGGAGGTTGCATGGCTGATGAATCCGTGAATT 553
Query 659 GGGGTGAGGTTTTCGACATAATGACTCAAACTTGGGAACCTTTACCTGACCCTGG-CGCT 717
||||||| ||||| ||||||| |||||||||||||||| |||||||||||||||| | ||
Sbjct 554 GGGGTGAAGTTTTTGACATAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGTC-CT 612
Query 718 GAGCTCCGCTTTTCTTCAATTAGAAAAATAGAAGTGTTCCAAGGAAAGCTTTACGTTAGA 777
||| |||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 613 GAGTTCCGTTTTTCTTCAATTAGAAAAATAGATGTGTTCCAAGAAAAGCTTTACGTTAGA 672
Query 778 AGCAATGAGAAGAAAGACTCTGTTTATGATCCAAAAGAAG 817
||||| ||||||||||||||||||||||||||||||||||
Sbjct 673 AGCAACGAGAAGAAAGACTCTGTTTATGATCCAAAAGAAG 712
Score = 187 bits (101), Expect = 2e-46
Identities = 178/213 (84%), Gaps = 13/213 (6%)
Strand=Plus/Plus
Query 817 GGTATGATTGAAATAGCTAACTATGGTGGGAAACTCTTAATCTTATGGGACAAGTTTGTG 876
|||| ||||||||| | | ||||||| || ||||||||||||||||||||||| | |
Sbjct 763 GGTACGATTGAAATTGTTCACTATGGCGGAAAACTCTTAATCTTATGGGACAA----G-G 817
Query 877 CTTCATGGTAC-TTGTCAAGAGAAAGATATTTGGTGTGCCCTGATTGCGCTTGAAAGACG 935
| | | | | || ||| || ||||||||||||||||| ||||||||||||||| |||
Sbjct 818 --T-A-GAT-CTTTCTCATGACAAAGATATTTGGTGTGCGGTGATTGCGCTTGAAAAACG 872
Query 936 -CGATGGTAGTGATGAAGTTTGGGGAAACATTGACTGGGCTAATATTGTGTTGACCGTTC 994
| ||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||
Sbjct 873 TC-ATGGTAGTGATGAAGTTTGGGGAAACATTGAATGGGCTGATATTGTGCTGACGGTTC 931
Query 995 CTAACGCATATGTTTTTGTGAATAGTCTAAAAA 1027
||| | |||| ||||| |||||||||||| |||
Sbjct 932 CTAGCTCATACGTTTTCGTGAATAGTCTAGAAA 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5