BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351825
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28690.1 | Symbols: | Protein of unknown function (DUF1685)... 850 0.0
> AT5G28690.1 | Symbols: | Protein of unknown function (DUF1685)
| chr5:10722738-10724091 FORWARD LENGTH=1263
Length=1263
Score = 850 bits (460), Expect = 0.0
Identities = 548/589 (93%), Gaps = 11/589 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAGAAGAAGAGAAGGTCTTACCTTACCAATTTCGTCTTCAACGCCATCGCTTCCT 60
|||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 296 ATGGTGAGGAGAAGAGAAGGTCTTACCTTACCAATCTCGTCTTCGACGCCATCTCTTCCC 355
Query 61 GAATCACTACCCGATATTAAAACAGTGGCGCCACATAAACCAAAACAACGGTTATCTAAG 120
|| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 356 GAGTCACTACCTGATATTAAAACAGTGGCTCCTCATAAACCAAAACAACGGTTATCTAAG 415
Query 121 CAATTATCAATGCGTGAGACACCGCGAGATGTTGCTTGGGAAAAAAGGCGCCGTCAGATG 180
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 416 CAGTTATCAATGCGTGAGACACCTCGAGATGTTGCTTGGGAAAAAAGGCGCCGTCAGATG 475
Query 181 TTAAAGATTCAGGAGAAGAAGCAAAAAGGCGTCTCTGAAAACGATAGTGATCCGCCAGAT 240
|||||||||||||||||||| |||||| |||||||||||||||||| ||| |||| |||
Sbjct 476 TTAAAGATTCAGGAGAAGAAACAAAAAAGCGTCTCTGAAAACGATAACGATTCGCCGGAT 535
Query 241 CTAACCGATGAAGATTTAAGGGAGCTTAAAGGGTCGATCGAGTTAGGGTTTGGTTTCAAT 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 536 CTAACTGATGAAGATTTAAGGGAGCTTAAAGGGTCGATCGAGTTAGGGTTTGGTTTCAGT 595
Query 301 GAAGAAGCTGGACAGATGCTT-TGCAACACATTACCAGCATTAGATCTTTACTTTGCTGT 359
|||||||| ||||||| | || |||||||| ||||||||||| || ||||||||||||||
Sbjct 596 GAAGAAGCCGGACAGAAG-TTGTGCAACACGTTACCAGCATTGGACCTTTACTTTGCTGT 654
Query 360 GAATAGGCAGCTTTCGCCTCTTCCTTCACCTAGTAGCAGCCGTAGCAGCAATGGAGGAGA 419
||||||||||||||||||||| |||||||||||||||||| | | |||||||||
Sbjct 655 GAATAGGCAGCTTTCGCCTCTCCCTTCACCTAGTAGCAGC---A--A----TGGAGGAGA 705
Query 420 TGGATCCTTGTCTTCTACTTCTGTTTCCTCAAGCAGCATACCTTGTAGCCCAAAAACCGA 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 706 TGGATCCTTGTCTTCTACTTCTGTTTCCTCAAGCAGCATACCTTGTAGTCCAAAAACCGA 765
Query 480 CTCGGATTCATTAAAGATCCTATGCCCAGGGGACAATCCTCAACAGGTGAAGCAAAGATT 539
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 766 CTCGGATTCATTAAAGATCTTATGTCCAGGGGACAATCCTCAACAAGTGAAGCAAAGATT 825
Query 540 ACGACATTGGGCACAAGCTGTTGCATGTTCTTTGATGCAATCTCACTGA 588
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 826 ACGACATTGGGCACAAGCCGTTGCATGTTCTTTGATGCAATCTCACTGA 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5