BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351848

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05190.1 | Symbols:  | D-aminoacid aminotransferase-like PLP...   132    4e-30
  AT1G54280.1 | Symbols:  | ATPase E1-E2 type family protein / ha...   104    9e-22


> AT3G05190.1 | Symbols:  | D-aminoacid aminotransferase-like PLP-dependent 
enzymes superfamily protein | chr3:1471397-1475784 
FORWARD LENGTH=2147
Length=2147

 Score =  132 bits (71),  Expect = 4e-30
 Identities = 91/100 (91%), Gaps = 4/100 (4%)
 Strand=Plus/Plus

Query  246  GGAA-GTTGGTACTATACC---AGATGGAATATGGGCACCATGGTGGTACAAGAGTGTGC  301
            |||| | |||| |||||||   ||||||| |||||||||||||||||||||||||||| |
Sbjct  602  GGAAGGCTGGTCCTATACCAGAAGATGGAGTATGGGCACCATGGTGGTACAAGAGTGTTC  661

Query  302  ACGAATCAACAGGTTTCTCATCTCCAAAGAAGTATCCTCG  341
            |||||||||| |||||||||||||||||||||||||||||
Sbjct  662  ACGAATCAACGGGTTTCTCATCTCCAAAGAAGTATCCTCG  701


 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 40/43 (93%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  429   GTGGAATTGTGCTGGTGACTGCAACCACGCGCCGAAACTCGCC  471
             |||||||||||||||||||||||||||| ||||| || |||||
Sbjct  1226  GTGGAATTGTGCTGGTGACTGCAACCACACGCCGCAATTCGCC  1268


> AT1G54280.1 | Symbols:  | ATPase E1-E2 type family protein / 
haloacid dehalogenase-like hydrolase family protein | chr1:20262766-20267821 
REVERSE LENGTH=4199
Length=4199

 Score =  104 bits (56),  Expect = 9e-22
 Identities = 79/89 (89%), Gaps = 5/89 (6%)
 Strand=Plus/Plus

Query  6     GATATGCATGCAGTTTACTGA-AATAGGCTATGAAGCAGATATCCATTTCACTTACAA-T  63
             ||||||| ||||||||||| |  | ||| ||||||||||||||||||||||||||||| |
Sbjct  2788  GATATGCCTGCAGTTTACT-ACGACAGGGTATGAAGCAGATATCCATTTCACTTACAAAT  2846

Query  64    GTAGAGGAATCATCA-AAAGACTCTGAAG  91
             || |||||||||||| ||| |||||||||
Sbjct  2847  GTGGAGGAATCATCACAAA-ACTCTGAAG  2874



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5