BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351855

Length=1341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26270.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   110    5e-23


> AT5G26270.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:9206508-9207512 
FORWARD LENGTH=918
Length=918

 Score =  110 bits (59),  Expect = 5e-23
 Identities = 200/262 (76%), Gaps = 34/262 (13%)
 Strand=Plus/Plus

Query  9    CGTTGCCGCCGTCGACGACCCTCCCTTGCCAGAACCCCCTGACCCGCCCGATCCTCC-TA  67
            ||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||||| | 
Sbjct  9    CGTGGCCGCCGGCGAGGACCCTCCCTTGCCAGAACCCCCTGACCCGCCTGATCCTCCCT-  67

Query  68   ACCATCCCTTCTGCTTCGTTCTAATCTCCAT-CTCCAATCCATCACCCATCTCTCCTCCC  126
             |||||  ||| ||  |   | || || ||| | || ||||| | |   | ||| || | 
Sbjct  68   -CCATC--TTC-GC--C---CAAACCTTCATAC-CCGATCCA-C-C---T-TCTACTTC-  110

Query  127  TT-TACACATTTCCACCTTCCACTTTCTTTGGATCCAGTTCTAGATCT-TGGTTCTTCCG  184
            || | | | ||||||||||| | |  |   |  || || ||||||||| || |||| |||
Sbjct  111  TTCT-CTC-TTTCCACCTTC-A-T--CGA-G--TCTAGATCTAGATCTATG-TTCTACCG  160

Query  185  CTTCTTCTTTTGGTGGTTCC-CCTTTCGCTTCTTTGCGAATCTTTACTGCTGTGTGCAGT  243
             |||||| | ||||| || | ||||||| || ||||||| ||||||||||||||||||||
Sbjct  161  TTTCTTCCTATGGTG-TTACTCCTTTCGTTTTTTTGCGATTCTTTACTGCTGTGTGCAGT  219

Query  244  CCCTGGTTTCAGACCTGTTCCC  265
            ||||  | ||||| |||| |||
Sbjct  220  CCCTTCTATCAGATCTGTACCC  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 66013716675


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5