BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351872
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15880.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 662 0.0
AT2G15890.1 | Symbols: MEE14 | maternal effect embryo arrest 14... 239 3e-62
> AT2G15880.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr2:6918039-6920319 REVERSE LENGTH=2184
Length=2184
Score = 662 bits (358), Expect = 0.0
Identities = 400/421 (95%), Gaps = 0/421 (0%)
Strand=Plus/Plus
Query 167 GATACAATGACTTCGAAGGTCAGGTCCCTCCTGAGCTTTTCAAGAAGGATCTCGATGCCA 226
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 563 GATACAATGATTTCGAAGGTCAAGTCCCTCCTGAGCTTTTCAAAAAGGATCTCGACGCCA 622
Query 227 TTTTCTTGAACAACAACAGATTCACATCTACCATTCCTGATTCCCTCGGAGAATCCCCAG 286
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 623 TTTTCCTGAACAACAACAGATTCACGTCTACCATTCCTGATTCCCTCGGAGAATCATCAG 682
Query 287 CCTCCGTTGTGACCTTTGCTCACAACAAATTCAGCGGTTGTATCCCTAGAAGTATTGGAA 346
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 683 CCTCCGTTGTGACCTTTGCTCACAACAAATTTAGCGGTTGTATCCCTAGAAGTATTGGAA 742
Query 347 ACATGAAGAATCTCAACGAGATTATCTTTAAGGACAACAGTCTTGGCGGTTGTTTCCCAT 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 743 ACATGAAGAATCTCAACGAGATTATCTTTAAGGACAACAGTCTTGGCGGTTGTTTCCCGT 802
Query 407 CAGAGATCGGGAAGCTAGCTAATGTGAACGTGTTTGACGCTAGCCTGAACTCCTTCACCG 466
||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 803 CAGAGATTGGGAAGCTAGCCAATGTGAACGTGTTTGACGCTAGCATGAACTCCTTCACTG 862
Query 467 GTGTTCTACCCCCAAGCTTTGTCGGGCTTACCAGTTTAGAAGTGTTTGATATCTCTGGGA 526
|||||||||| |||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 863 GTGTTCTACCTCCAAGCTTTGTCGGGCTTACCAGTATGGAAGAGTTTGATATCTCTGGGA 922
Query 527 ATAAACTCACTGGGTTCATGCCAGAGAATATCTGCAAGTTGCCTAAATTGGTTAACTTGA 586
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 923 ATAAACTCACCGGGTTCATACCAGAGAATATATGCAAGTTGCCTAAATTGGTTAACTTGA 982
Query 587 C 587
|
Sbjct 983 C 983
> AT2G15890.1 | Symbols: MEE14 | maternal effect embryo arrest
14 | chr2:6920369-6922025 REVERSE LENGTH=1486
Length=1486
Score = 239 bits (129), Expect = 3e-62
Identities = 147/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 1 ATGAAATTACATATTCATATTCCTGATGGTTTACCAAAATCTGAACAAGAATTGGAGGAA 60
||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 495 ATGAATTTGCACATTCATATTCCTGATGGTTTACCAAAATCTGAACAAGAGTTGGAGGAA 554
Query 61 GAAGAGAAATCGAAAATGCCGGATTCCGCTTTCACTAGATTGCTTAGAACTAAAGGAACT 120
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 555 GAAGAGAAATCGAAAATGCCGGATTCAGCTTTCACTAGATTGCTTAGAAGTAAAGGAACT 614
Query 121 ATCCCTGCTTGGTTCTCTCATGCTCCGGATCACGAA 156
|||||||||||||||||||| ||||| || ||||||
Sbjct 615 ATCCCTGCTTGGTTCTCTCACGCTCCTGACCACGAA 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5