BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351886
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07990.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 987 0.0
> AT4G07990.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr4:4825409-4829136 REVERSE LENGTH=1133
Length=1133
Score = 987 bits (534), Expect = 0.0
Identities = 653/708 (92%), Gaps = 18/708 (3%)
Strand=Plus/Plus
Query 1 ATGGGAGGCGAAGATGAGAAAGATAAGAAATGGAATCCTCCGCCGCCGCCGCAGAAGGCG 60
||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||| ||
Sbjct 200 ATGGGAGGCGAAGATGATAAAGATAAGAAATGGAATCCTCCACCACCGCAGCAGAAGCCG 259
Query 61 GACTTAAAGCTTTGGGGAA-TCCTCGC-G-TTTACTGTAATCGGCGCAACCGCCACCACT 117
|||| || || || ||||| ||||||| | ||| ||||||| |||||||||| || |||
Sbjct 260 GACTCAAGGCCTT-GGGAAGTCCTCGCGGCTTT--TGTAATCTGCGCAACCGCTACTACT 316
Query 118 TTTGCCGTTCATCAGCTGCGAAGAAGTTTTGATTGGGTCTATACCCAGGTAGCTAGATCA 177
|| |||||||||||||||||||||| |||||||||||||||||||||| || ||||| ||
Sbjct 317 TTCGCCGTTCATCAGCTGCGAAGAAATTTTGATTGGGTCTATACCCAGCTAACTAGAACA 376
Query 178 CAGTCAGCGCGGAAAGGAGCGAAAGGCGGTTCTTTCCGAACAGCTTATCAGGAGGAAGCA 237
| ||| | |||| || ||| | || ||||||||||| ||| |||||||||||||
Sbjct 377 CCGTC-G-GCGGGAA-GAG-G-AA-------CTTTCCGAACATCTTTTCAGGAGGAAGCA 424
Query 238 TGGAGAAGGTACAACAAACGGATGCAAGAGGAGTATGAGGATGAGTTGGAGAGAGTGGAA 297
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 425 TGGAGAAGGTACAATAAACGGATGCAAGAGGAGTATGAGGATGAGTTGGAGAGAGTGGCA 484
Query 298 CGTATTAGGCGTATGCAAAGCGTTTTCAACAGAGAGAGAAATAAATTTAGGAGGGGCTAT 357
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 485 CGTATTAGGCGTATGCAAAGCGTTTTCAACAGAGAGAGGAATAAATTTAGAAGGGGCTAC 544
Query 358 GAGAACTGGAAAGAAAATGATCCTGGTGCACAGCAATACCATCAGCAGTTTCAGCGACAT 417
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GAGAACTGGACGGAAAATGATCCTGGTGCACAGCAATACCATCAGCAGTTTCAGCGACAT 604
Query 418 GATTGGTACTGGAAAACTGAGTCTTCGCATAGAAACCAAAGAACTAATCACCAGGAGCCT 477
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 605 GATTGGTACTGGAAAACTGAGTCTTCGCATAGAAACCAAAGGACCAATCACCAGGAGCCT 664
Query 478 CCAGACCAGAGAAGAGTATATCCATTATCACACCATTACTCGGTTTTAGGGCTCAGCAGG 537
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 665 TCAGACCAGAGAAGAGTATATCCACTATCACACCATTACTCGGTTTTAGGGCTCAGCAGG 724
Query 538 TCCCGAGCAACTCCATACACAGAAGCTGAGATTAAGAAAGCGTTCAGGGAAAAGGCTCTG 597
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 725 TCCCGAGCAACTCCATACACAGAAGCTGAGATTAAGAAAGCATTCAGGGAAAAGGCTTTG 784
Query 598 GAATTCCATCCGGACCAAAATCAGGATAACAAAGTTGTAGCTGAAGCAAAATTCAAAGAG 657
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 785 GAATTCCATCCAGACCAAAATCAGGATAACAAAATTGTAGCTGAAGCAAAATTCAAAGAG 844
Query 658 GTGTTACTTTCATATGAAGCTATAAAAGAGGAAAGAAAAGAGAAGTGA 705
||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 845 GTGTTACTTTCATATGAAGCTATAAAACAGGAAATAAAAGAGAAGTGA 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5