BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351887

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61530.1 | Symbols:  | small G protein family protein / RhoG...   749    0.0  


> AT5G61530.1 | Symbols:  | small G protein family protein / RhoGAP 
family protein | chr5:24742048-24744784 FORWARD LENGTH=1569
Length=1569

 Score =  749 bits (405),  Expect = 0.0
 Identities = 453/476 (95%), Gaps = 4/476 (1%)
 Strand=Plus/Plus

Query  135  GCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG  194
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  GCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG  494

Query  195  GACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCCGTTGGAAAGATCAA  254
            ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  495  GACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATCAA  554

Query  255  AATGGAAGAGGCAGCCAAAAAGACTGCACAAAAAAGCAAGACCATTTTGACGGACATCGA  314
            | |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  555  AGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTTTGACGGATATCGA  614

Query  315  AAGGTGGCAGAAGGGAGTTGCCAGCTCAGATATGTTTGGTGTTCCGATTGAGATCACTGT  374
            ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct  615  AAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGATTGAGATCACTGT  674

Query  375  CCAGCGGCAGGAGTCAAGCAGGCCTATTCCAT-TGGTACT-GATTAAATGCGCAGATTAT  432
            |||||||||||||||||||||||||||||| | || |||| | |||||||||||||||||
Sbjct  675  CCAGCGGCAGGAGTCAAGCAGGCCTATTCC-TCTGATACTAG-TTAAATGCGCAGATTAT  732

Query  433  CTCATATTAACAGGGCTTAATTCACCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTG  492
            |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct  733  CTCATATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTG  792

Query  493  ATTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGTGCGTCAATACCTGAGGGTGTG  552
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  793  ATTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATACCTGAGGGTGTG  852

Query  553  AATCCAGTTGATGTCGCTGCACTCATGAAATACTATCTTGCCACCCTTCCGACACC  608
            |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct  853  AATCCAGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTTCCGACACC  908



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30090254053


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5