BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351902
Length=2544
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05400.1 | Symbols: | LRR and NB-ARC domains-containing dis... 941 0.0
> AT5G05400.1 | Symbols: | LRR and NB-ARC domains-containing disease
resistance protein | chr5:1597745-1600369 REVERSE LENGTH=2625
Length=2625
Score = 941 bits (509), Expect = 0.0
Identities = 915/1109 (83%), Gaps = 36/1109 (3%)
Strand=Plus/Plus
Query 22 GCAATATCATGTGACCAAGCTATTAATAACCTTACCAGCTGCATTAGCGGGGACGGAAAT 81
|||||||| |||||||| ||| ||||||||||||| |||||| ||||| || || |||
Sbjct 22 GCAATATCCTGTGACCAGGCTGTTAATAACCTTACAAGCTGCCTTAGCAGGAAC-CAAAA 80
Query 82 TC-CTTCCGCAACCTTGT-GAACAATCTTGCATCTCTGAGGCGAGCTACACGACAGCTGG 139
|| |||||||||||| || || | || | || |||| | | | || ||||||| |||
Sbjct 81 TCGCTTCCGCAACCTCGTAGATC-ATGTAGCGGCTCTAAAGAAAACTGTACGACAGTTGG 139
Query 140 AAGCAAGAGGAGATGATTTGCTGACAAGGGTAAAAGTGCAAGAAGATGGTGGCCGAAGCC 199
| |||||| ||||||||||| ||| |||| | || || ||||||||| | || | || ||
Sbjct 140 AGGCAAGACGAGATGATTTGTTGAAAAGGATTAAGGTACAAGAAGATAGAGGTCTAAACC 199
Query 200 GATTAGCTGAAGTCCAAGAATGGCTTTCGGAAGTTGATA-TCACGGTACGTGAAACCCAT 258
||| | |||||||||| |||||||||| || || || | | | |||| ||||| |||||
Sbjct 200 TATTGGATGAAGTCCAACAATGGCTTTCTGAGGTCGAAAGT-AGGGTATGTGAAGCCCAT 258
Query 259 GATTTACTTTTGCAAAGCGATGATGAAATAGATAAGTTATGTTGTTATCAATATTGTTCC 318
||| | || | |||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 259 GATATCCTCTCGCAAAGCGATGAAGAAATAGATAATTTATGTTGTGGCCAATATTGTTCT 318
Query 319 AAGA-ATTGGATATCA-AGAAATGGTTATAGTAAAAGGGTAGTCAAGC-AGTTGAC-AGA 374
|||| | || | || | || | | ||||||||||| ||| |||| | ||||| | |||
Sbjct 319 AAGAGA-TGTAAAT-ATAGCTACGACTATAGTAAAAGTGTAATCAA-CAAGTTG-CAAGA 374
Query 375 AACTGAGATTC-TCTTATTTAGAGGAGTTTTTGATGAAGTAACTCAAAGAGGTCCTATAC 433
||||| || || ||| || ||| |||||||||||||| |||||| |||||||||||
Sbjct 375 TGTTGAGAATCTTC-TATCTAAAGGCGTTTTTGATGAAGTTGCTCAAAAAGGTCCTATAC 433
Query 434 AAAAGGTGGAGGAGAGGCTTTTCCACCAGAAGATATTTGGTCAAGAGG-AATTGATTGAA 492
|||||||||||| ||||||||||||||| ||||| |||||||||||| ||||| |||||
Sbjct 434 CAAAGGTGGAGGAAAGGCTTTTCCACCAGGAGATAGTTGGTCAAGAGGCAATTG-TTGAA 492
Query 493 TCAACCTGGAATAGTATCATGGAGGACGGAGTTGGGATTTTGGGTATTTATGGCATGGGG 552
||||| ||||||||||| ||||| | ||||||||| |||||||||| ||||| ||||||
Sbjct 493 TCAACATGGAATAGTATGATGGAAGTGGGAGTTGGGCTTTTGGGTATATATGGTATGGGG 552
Query 553 GGAGTGGGCAAGACCACACTCCTCTCTCAAATCAACAACAAGTTTCTCATAGAAAGCAAC 612
||||| ||||||||||| |||||||||||||||||||||||||| | || || |||||||
Sbjct 553 GGAGTAGGCAAGACCACCCTCCTCTCTCAAATCAACAACAAGTTCCGCACAGTAAGCAAC 612
Query 613 CAATTTGACATTGTAATATGGGTTGTGGTGTCTAACAACACAACGGTTAAGAGGATTCAA 672
| |||||||||| |||||||||||| |||||||| ||| |||| |||||||||||||||
Sbjct 613 GATTTTGACATTGCAATATGGGTTGTAGTGTCTAAAAACCCAACTGTTAAGAGGATTCAA 672
Query 673 GAAGATATTGGCAAAAGACTAGAGATCTACGATGA-AAACTGGGAA-AGGAAAACAGAAA 730
||||| ||||| ||||||||||| ||||| | || | |||||| | ||||||||||
Sbjct 673 GAAGACATTGGAAAAAGACTAGATCTCTACAACGAGGGA-TGGGAACA-AAAAACAGAAA 730
Query 731 ATGAGAAAGCGTGTGA-TATAAACAAGTCTCTAAAGACCAAG-AGATATGTGTTATTGTT 788
|||||| ||| | | ||||| | |||| || ||| ||| || ||| || |||||||
Sbjct 731 ATGAGATAGCAT-CAACCATAAAGAGGTCTTTAGAGAATAAGAAG-TATATGCTATTGTT 788
Query 789 GGATGATATGTGGAGGAAGGTGGATTTAGCAAGCATTGGAGTTCCGGTTCC-AAGAAGAA 847
|||||||||||||| ||||||||||||||||| ||||||| |||||||||| || |||||
Sbjct 789 GGATGATATGTGGACGAAGGTGGATTTAGCAAACATTGGAATTCCGGTTCCTAA-AAGAA 847
Query 848 ATGGAAGTAAAATAGTATTCACCACTCGTTCTAATGAAGTTTGC-GGAAGAATGGGGGTA 906
||||||||||||||| |||||| | ||||||||||||||||||| |||| ||||||||||
Sbjct 848 ATGGAAGTAAAATAGCATTCACAAGTCGTTCTAATGAAGTTTGCGGGAA-AATGGGGGTA 906
Query 907 GATAAGGAGATAGAGGTAACATGTATGATGTGGGATGATGCTTGGAATTTGTTCACTAAA 966
|||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |
Sbjct 907 GATAAGGAGATAGAGGTAACATGTTTGATGTGGGATGATGCCTGGGATTTGTTCACGAGG 966
Query 967 AATATGGAAGAAACAATAAAAAGTCATCCAGATATTCTTGAAGTCGCAAGATCAGTTGCG 1026
|| ||| |||| ||| | ||||||||||| | |||| ||||| |||| |||| | ||
Sbjct 967 AACATGAAAGAGACATTGGAAAGTCATCCAAAGATTCCCGAAGTTGCAAAATCAATAGC- 1025
Query 1027 AA-AAAGTGTAAAGGCTTGCCACTCGCTCTCAATGTAATTGGCGAAGTC-ATGGCACGCA 1084
|| |||||| || ||||||||||| ||||||||||| |||||||| | | ||||| ||||
Sbjct 1026 AAGAAAGTGCAATGGCTTGCCACTTGCTCTCAATGTCATTGGCGA-GACCATGGCTCGCA 1084
Query 1085 AGAAGAC-AGTTGAAGAGTGGCATCACGC 1112
||||| | | | |||||||||||| ||||
Sbjct 1085 AGAAGTCCA-TCGAAGAGTGGCATGACGC 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126270195531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5