BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351911

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G45063.1 | Symbols:  | copper ion binding;electron carriers ...   435    2e-121
  AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-6...   130    1e-29 


> AT1G45063.1 | Symbols:  | copper ion binding;electron carriers 
| chr1:17033335-17035105 REVERSE LENGTH=1329
Length=1329

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 308/344 (90%), Gaps = 2/344 (1%)
 Strand=Plus/Plus

Query  98    AGGTAGGCGACTCCAAAAGATGGAGCGTTTACGACAGTGAGTTCTATTACCAGTGGAGTA  157
             |||| || ||||||||||| ||| |||||||||||||||| ||||||||| | |||||||
Sbjct  668   AGGTTGGTGACTCCAAAAGTTGGGGCGTTTACGACAGTGATTTCTATTACAACTGGAGTA  727

Query  158   AAGAGAAACAGTTCCATGTTGGAGACAGTCTCCTTTTTGAAAACAACAACAAAGTCAATG  217
             |||||||||||||| |||| |||||| |||||||||| ||| |||||||  ||||||| |
Sbjct  728   AAGAGAAACAGTTCAATGTCGGAGACGGTCTCCTTTTCGAATACAACAATGAAGTCAACG  787

Query  218   ATGTCTTCGAGATCAGCGGCGACCTTGAATTCCTATACTGCGACCCGATTTCTCCCGTAG  277
              ||||| |||||||||||| |||||||||||| || |||||||||||| ||||||  |||
Sbjct  788   GTGTCTACGAGATCAGCGGTGACCTTGAATTCTTAAACTGCGACCCGACTTCTCCAATAG  847

Query  278   CCGTGCACAAGACAGGCCACGATCTCGTCAAGCTCACCGAACCAGGAATCCATTATTTCA  337
             ||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct  848   CCGTGCATAAGACAGGCCACGATATCATCAAGCTCACCAAACCAGGAATCCATTATTTCA  907

Query  338   TTAGCTCAGAACCAGGTCACTGTGAGGCTGGACTTAAGCTCCAAGTTGTGGTTGGACCAA  397
             ||||||||||||| |||||||||| |||||| |||||||||||||| ||||| ||| |||
Sbjct  908   TTAGCTCAGAACCGGGTCACTGTGGGGCTGGTCTTAAGCTCCAAGTCGTGGTCGGAACAA  967

Query  398   CAGC-CAATGTTCCAAAGTTGTCACCTTTAGAACGTCTCACAAG  440
             || | ||||||||||||||||||||||||||| |||||||||||
Sbjct  968   CA-CTCAATGTTCCAAAGTTGTCACCTTTAGAGCGTCTCACAAG  1010


> AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-644336 
FORWARD LENGTH=855
Length=855

 Score =  130 bits (70),  Expect = 1e-29
 Identities = 77/80 (96%), Gaps = 2/80 (3%)
 Strand=Plus/Plus

Query  10   ATTATTTTCATCGACTTGATTCTTCACAAAACAAAGGCTTATAGACACATACTCTACAAT  69
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  167  ATTATTTTCATCGACTTGATTCTTCACAAAACAAAGGCTTATAGACACTTACTCTACAAT  226

Query  70   GT-GTTTAATCAAGAATCTG  88
            || ||| |||||||||||||
Sbjct  227  GTTGTT-AATCAAGAATCTG  245



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5