BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg351911 Length=474 Score E Sequences producing significant alignments: (Bits) Value AT1G45063.1 | Symbols: | copper ion binding;electron carriers ... 435 2e-121 AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-6... 130 1e-29 > AT1G45063.1 | Symbols: | copper ion binding;electron carriers | chr1:17033335-17035105 REVERSE LENGTH=1329 Length=1329 Score = 435 bits (235), Expect = 2e-121 Identities = 308/344 (90%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 98 AGGTAGGCGACTCCAAAAGATGGAGCGTTTACGACAGTGAGTTCTATTACCAGTGGAGTA 157 |||| || ||||||||||| ||| |||||||||||||||| ||||||||| | ||||||| Sbjct 668 AGGTTGGTGACTCCAAAAGTTGGGGCGTTTACGACAGTGATTTCTATTACAACTGGAGTA 727 Query 158 AAGAGAAACAGTTCCATGTTGGAGACAGTCTCCTTTTTGAAAACAACAACAAAGTCAATG 217 |||||||||||||| |||| |||||| |||||||||| ||| ||||||| ||||||| | Sbjct 728 AAGAGAAACAGTTCAATGTCGGAGACGGTCTCCTTTTCGAATACAACAATGAAGTCAACG 787 Query 218 ATGTCTTCGAGATCAGCGGCGACCTTGAATTCCTATACTGCGACCCGATTTCTCCCGTAG 277 ||||| |||||||||||| |||||||||||| || |||||||||||| |||||| ||| Sbjct 788 GTGTCTACGAGATCAGCGGTGACCTTGAATTCTTAAACTGCGACCCGACTTCTCCAATAG 847 Query 278 CCGTGCACAAGACAGGCCACGATCTCGTCAAGCTCACCGAACCAGGAATCCATTATTTCA 337 ||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 848 CCGTGCATAAGACAGGCCACGATATCATCAAGCTCACCAAACCAGGAATCCATTATTTCA 907 Query 338 TTAGCTCAGAACCAGGTCACTGTGAGGCTGGACTTAAGCTCCAAGTTGTGGTTGGACCAA 397 ||||||||||||| |||||||||| |||||| |||||||||||||| ||||| ||| ||| Sbjct 908 TTAGCTCAGAACCGGGTCACTGTGGGGCTGGTCTTAAGCTCCAAGTCGTGGTCGGAACAA 967 Query 398 CAGC-CAATGTTCCAAAGTTGTCACCTTTAGAACGTCTCACAAG 440 || | ||||||||||||||||||||||||||| ||||||||||| Sbjct 968 CA-CTCAATGTTCCAAAGTTGTCACCTTTAGAGCGTCTCACAAG 1010 > AT4G01510.1 | Symbols: ARV2 | Arv1-like protein | chr4:642733-644336 FORWARD LENGTH=855 Length=855 Score = 130 bits (70), Expect = 1e-29 Identities = 77/80 (96%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 10 ATTATTTTCATCGACTTGATTCTTCACAAAACAAAGGCTTATAGACACATACTCTACAAT 69 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 167 ATTATTTTCATCGACTTGATTCTTCACAAAACAAAGGCTTATAGACACTTACTCTACAAT 226 Query 70 GT-GTTTAATCAAGAATCTG 88 || ||| ||||||||||||| Sbjct 227 GTTGTT-AATCAAGAATCTG 245 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22555132003 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5