BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351970
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08560.1 | Symbols: APUM15, PUM15 | pumilio 15 | chr4:545043... 854 0.0
> AT4G08560.1 | Symbols: APUM15, PUM15 | pumilio 15 | chr4:5450434-5453183
FORWARD LENGTH=1434
Length=1434
Score = 854 bits (462), Expect = 0.0
Identities = 576/631 (91%), Gaps = 7/631 (1%)
Strand=Plus/Plus
Query 318 CCCTTGGA-G-TGATGCATATGGTTATATGTCTGGAATCCGCAATACTCTATTATCGCGT 375
||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 416 CCCTT-GATGATGATGCATATGGTTATATGTATGGAATCCGCAATACTCTATTATCGCGT 474
Query 376 GCTAAAGACCGTATAGAGTCTCGCCTGTTGCAAGATGTGATTGCCAAGGGTTCAAAGGAG 435
||||||||| |||||||||||| | |||||||| |||||||||||||||||| |||||||
Sbjct 475 GCTAAAGACGGTATAGAGTCTCACATGTTGCAATATGTGATTGCCAAGGGTTTAAAGGAG 534
Query 436 ACAATTGATAAGATATTTGACAATTTGATCTCAAATGTTTGTGAATTGATGCTTGATCCT 495
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 535 ACAATTGATAAGATATTTGACAATTTGATCTCACATGTATGTGAATTGATGCTTGATTAT 594
Query 496 TTTGGCCATCGCGTCTTT-GAAAAGCTTATGGAGAAATGCACCGATGAACAGATCACTCG 554
| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 595 TATGGCCATAAAGTCTTTCG-AAAGCTTATGGAGAAATGCACCGATGAACAGATCACTCG 653
Query 555 GGTTTTGGATATAGTCCTTCAGCAACCTCTTCAATTTGTTAGGCTTTGTGTCGATTCACA 614
||||||||||||||||||| || ||||| || |||||||||||||||||||| || ||||
Sbjct 654 GGTTTTGGATATAGTCCTTGAGGAACCTTTTGAATTTGTTAGGCTTTGTGTCCATACACA 713
Query 615 CGGAACCCGTGCAATACAAGATTTGATGCGAAGTCTTTGTTCTGTAGAGCAAATAGCTCG 674
|||||| | ||||||||||| ||||||||| ||||||||||||| |||||||||| ||||
Sbjct 714 CGGAACACATGCAATACAAGGTTTGATGCGTAGTCTTTGTTCTGAAGAGCAAATATCTCG 773
Query 675 GTTCATGGCAACACTATGCCATGTTGCACTTCTATTGACCAAAGACGCTAATGCTAATCT 734
|||||||| ||| |||||| ||||| |||||||||||||||| |||| || |||| |||
Sbjct 774 GTTCATGGAAACTCTATGCTATGTTTCACTTCTATTGACCAAGGACGTTATTGCTCATCG 833
Query 735 TGTGATTTTGTTCTGCTTCAATCACTTTTCTCCTTCACATAGCAGATATCTTCTTGAAGT 794
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 834 TGTGATTTTGTTCTGCTTCAATCAATTTTCTCCTTCACATACCAGATATCTTCTTGAAGT 893
Query 795 GATTGTTCAAAATTGTTATCAAGTTGCAATTGATCAACATGGATATTGTATGCTTAACCA 854
|||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
Sbjct 894 GATTGTTCAAAATTGTTATCAAGTTGCAATAGATCAAAATGGATGTTGTATGCTTAAAAA 953
Query 855 AT-GCATTAGACAATCCTCTCGAGAGCTAAGAGACCCTTTGATTAAGGAGATAATCACTA 913
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 954 ATTG-ATTAGACAATCCTCTCGAGAGCTAAGAGACCCTTTGATTAAGGAGATAATCAGTA 1012
Query 914 ATGTTGTGAGATTATGCAAGAATTGCTACGG 944
|| ||| ||||||||| ||||||||||||
Sbjct 1013 TTGCTGTAAGATTATGCGGGAATTGCTACGG 1043
Score = 383 bits (207), Expect = 3e-105
Identities = 238/253 (94%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 944 GAAACTACGTGGTGCAATATGTGTTG-GATTTGGAAGATTGTGAGGTTACAAGTGCTCTC 1002
|||||||||||||||||||| ||||| | |||| |||||| |||||| ||||||||||||
Sbjct 1073 GAAACTACGTGGTGCAATATTTGTTGCG-TTTGAAAGATTATGAGGTGACAAGTGCTCTC 1131
Query 1003 TCGAAACATCTTGATGGAAATTACGTGCAACTCTCTTATGACAAGTATGGGAGTCACGTG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TCGAAACATCTTGATGGAAATTACGTGCAACTCTCTTATGACAAGTATGGGAGTCACGTG 1191
Query 1063 GTGCAGAAGTGTTTGGAAAATAGAGAATTTTGCTCCAGGAGGATCATAGCCGAGCTGCTA 1122
||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct 1192 GTGCAGAAGTGTTTGGAAAGTAGAGAATTTTCCTCCAGGAGGATCATAGCGGAGCTGCTA 1251
Query 1123 AGTGACATTGATTCTCTTCTTGTAGATCCGTTTGGAAATTATGTGATTCAGACCGCGTGG 1182
|||||||||||||| |||||||||||||| | |||| ||||||||||||| || ||||||
Sbjct 1252 AGTGACATTGATTCACTTCTTGTAGATCCATATGGAGATTATGTGATTCAAACAGCGTGG 1311
Query 1183 ATTGTATCCGAGG 1195
|||||||||||||
Sbjct 1312 ATTGTATCCGAGG 1324
Score = 97.1 bits (52), Expect = 4e-19
Identities = 65/71 (92%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 2 TGGAATCTCCGGCCCAACGGATTAGGTGGGAGCTTCTCAGAACTTACGACCATTCGTTTC 61
|||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 357 TGGAATCTCCCGCTCAACGGATTTTGTGGGAGCGTCTCAGAACTTACGACCATTCGTTTC 416
Query 62 CCTTGAGTGAT 72
|||||| ||||
Sbjct 417 CCTTGA-TGAT 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5