BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351977
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08690.2 | Symbols: | Sec14p-like phosphatidylinositol tran... 1382 0.0
> AT4G08690.2 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr4:5551315-5552956 REVERSE LENGTH=1205
Length=1205
Score = 1382 bits (748), Expect = 0.0
Identities = 862/919 (94%), Gaps = 0/919 (0%)
Strand=Plus/Plus
Query 1 ATGAACCCTAATCCAGTGACTAATGGGTTTGTTAAACCTGTTCCTACTGAAGAAGAACAA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 ATGAACACTAATCCAGTGACTAATGGGTTTGTTAAACCTGTTCCTACTGAAGAAGAACAA 153
Query 61 GCAAAGATAGAGGAAGTGAGGAAGCTGCTAGGACCATTACCGGAGAAACTTTCGAGTTTT 120
|||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 154 GCAAAGATTGAGGAAGTGAGGAAGCTATTAGGTCCATTACCGGAGAAGCTTTCGAGTTTT 213
Query 121 TGTTCCGATGATGCGGTTTTGAGGTATCTAAGGGCGAGGAATTGGCATGTCAAGAAAGCT 180
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 214 TGTTCCGATGATGCAGTTTTAAGGTATCTAAGGGCAAGGAATTGGCATGTCAAGAAAGCT 273
Query 181 ACTAAGATGCTTAAAGAAACTTTGAAATGGAGAGTTCAATACAAACCTGAGGAGATTTGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ACTAAGATGCTTAAAGAAACTTTGAAATGGAGAGTTCAATACAAACCTGAGGAGATTTGT 333
Query 241 TGGGAGGAAATAGCTGGTGAAGCAGAGACAGGGAAGATATATAGGTCAAGTTGTGTCGAT 300
||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 334 TGGGAGGAAGTAGCTGGTGAAGCAGAGACAGGGAAGATATATAGATCGAGTTGTGTCGAT 393
Query 301 AAACTTGGACGACCTGTTCTTATCATGAGACCGAGTGTTGAGAATTCTAAGTCGGTGAAA 360
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 394 AAACTTGGACGACCTGTTCTCATTATGAGACCGAGTGTTGAGAATTCTAAATCGGTGAAA 453
Query 361 GGCCAGATTAGATATCTTGTGTATTGTATGGAGAATGCAGTTCAAAATTTGCCATCAGGG 420
|||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 454 GGCCAGATTAGATACCTTGTGTATTGTATGGAGAATGCAGTACAAAATTTGCCACCAGGG 513
Query 421 GAAGAACAGATGGTGTGGATGATAGATTTTCACGGCTATAGCTTGGCGAATATATCTTTA 480
||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||
Sbjct 514 GAAGAACAGATGGTGTGGATGATAGATTTTCACGGTTATAGTTTGGCGAATGTATCGTTA 573
Query 481 AGAACTACAAAAGAAACCGCTCATGTATTACAAGAACATTACCCTGAGCGATTAGCTTTT 540
|||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 574 CGAACAACGAAAGAAACCGCTCATGTATTACAAGAACATTACCCTGAGAGATTAGCTTTT 633
Query 541 GCCGTTCTCTACAATCCTCCCAAGTTCTTTGAACCCTTCTGGAAGGTGGCGAGGCCCTTC 600
|| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 634 GCTGTTCTCTACAATCCTCCTAAGTTCTTTGAACCTTTCTGGAAGGTGGCGCGGCCCTTC 693
Query 601 TTAGAGCCGAAGACACGGAACAAAGTGAAGTTTGTTTACTCAGATGACCCAAACACTAAG 660
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 694 TTAGAGCCGAAGACACGGAACAAAGTGAAGTTTGTTTACTCGGATGATCCAAACACTAAG 753
Query 661 CAGATAATGGAAGAGAACTTTGATATGGAGAAAATGGAGTCAGCGTTTGGTGGTAACGAT 720
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 754 GTGATAATGGAGGAGAACTTTGATATGGAGAAAATGGAGTTAGCGTTTGGTGGTAACGAT 813
Query 721 GACTCGGGTTTCAACATAAACAAGCATTCAGAGAGGATGAAAGAAGATGACAAGAAAAGA 780
||||||||||| |||||| | || ||||||||||| |||||||| || ||||||||||||
Sbjct 814 GACTCGGGTTTTAACATAGAGAAACATTCAGAGAGAATGAAAGAGGACGACAAGAAAAGA 873
Query 781 TTGGCTTCCTTGGAGGACATACCTTCCGCTTCTCTAGACTCACTCAGCATCTTATCGGTC 840
|||||||| ||||||| ||| |||||||||||||||||| |||||||| |||||||||
Sbjct 874 TTGGCTTCGTTGGAGGGCATTGTTTCCGCTTCTCTAGACTCGCTCAGCATTTTATCGGTC 933
Query 841 TCTGATGGTACAGCCTCTAACAGTGCTCACCCTAGCTCTCAGGATGTTTCTGAGGACGAG 900
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 934 TCTGATGGTACCGCCTCTAACAGTGCTCACCCTAGCTCTCATGATGTCTCTGAGGATGAG 993
Query 901 CATCAACCTCAGGGAAAGG 919
||| |||| ||| ||||||
Sbjct 994 CATTAACCACAGAGAAAGG 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5