BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg351979
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08700.1 | Symbols: ATPUP13 | Drug/metabolite transporter su... 658 0.0
AT5G41160.1 | Symbols: ATPUP12, PUP12 | purine permease 12 | ch... 628 2e-179
> AT4G08700.1 | Symbols: ATPUP13 | Drug/metabolite transporter
superfamily protein | chr4:5565853-5567458 REVERSE LENGTH=1403
Length=1403
Score = 658 bits (356), Expect = 0.0
Identities = 417/447 (93%), Gaps = 2/447 (0%)
Strand=Plus/Plus
Query 306 GTTTTCATTCGAGAA-GATTCTCAAGAGTGAGATTTTCGCTATAGTTCTCGAGATGCAGA 364
|||||| |||||||| | ||||||||||||||| ||| |||| |||||||||||||| |
Sbjct 811 GTTTTCTTTCGAGAATG-TTCTCAAGAGTGAGACGTTCTCTATGGTTCTCGAGATGCAAA 869
Query 365 TCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCAAGCGGGGAAT 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 870 TCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAAT 929
Query 425 GGCTGTTGTTGAGTGAGGAGATGGAAGAGTTTCAGGAGGGTCAAGTCATTTATGTTTTGA 484
|| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 930 GGATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGAGGGTCAAGTCATTTATGTTTTGA 989
Query 485 CTTTGGTTGGGACAGCGGTGTCGTGTCAATTGGGTTCTGTAGGATCCGTGGCGCTTATAT 544
||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 990 CTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGTGGCGCTTATAT 1049
Query 545 TTCTGGTGTCGTCGCTGTTCTCGAACCTTATTGGTACACTCTCACTCATTGTAACGCCTC 604
||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1050 TTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCATTGTTACGCCTC 1109
Query 605 TTGCTGCCATTGCCGTGTTCCACGACAAGCTGACTGAGGTTAAGATTGTCGCGATGCTCA 664
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1110 TTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGTCGCGATGCTCA 1169
Query 665 TTGCCTTCACAGGATTCGCGTTTTATATCTACCAGAATTATCTTGATGACTTGAAAGTAC 724
||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1170 TTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGACCTGAAAGTAC 1229
Query 725 AAAGAGCACGAGAAGCTCAAGCCGAAT 751
||||||||||||||||||| || ||||
Sbjct 1230 AAAGAGCACGAGAAGCTCAGGCTGAAT 1256
Score = 409 bits (221), Expect = 2e-113
Identities = 263/283 (93%), Gaps = 3/283 (1%)
Strand=Plus/Plus
Query 1 ATGTTGCTGCTAAAGGAAGAAGATGAGGGAAGAGGAAGAACTAGTGTTCCTACACAACTC 60
||||| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 191 ATGTTACTGCTAAAGGAAGAAGATGAAGGAACAAGAAGAACTAGTGTTCCTACACAACTC 250
Query 61 ATGAAACTAAAACGAACCCATTGGTGGATTCTTGTCTTCATAAGTATCTTCTTCCTCATC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 251 ATGAAACTAAAACGAACCCATTGGTGGATTCTTGTCTTTATAAGTATCTTCTTCCTCATC 310
Query 121 TCTGCTCAAGCCATTGGTGTTCTGCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGT 180
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 311 TCTGCACAAGCCATTGCTGTTCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGT 370
Query 181 AAATGGATCTCCACTCTTGTCCAAACCTGTGGctttccgattctttatctccctctttgt 240
||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 371 AAATGGATCTCTACTCTTGTCCAAACTTGTGGTTTTCCGATTCTCTATCTCCCTCTTTGT 430
Query 241 atccttccttcttcaaaatcttcttcttcattttcttcttctt 283
|||||||| ||||| | || ||||||||| ||||| |||||
Sbjct 431 TTCCTTCCTGCTTCACA--CT-CTTCTTCATCTTCTTGTTCTT 470
> AT5G41160.1 | Symbols: ATPUP12, PUP12 | purine permease 12 |
chr5:16477360-16478436 FORWARD LENGTH=1077
Length=1077
Score = 628 bits (340), Expect = 2e-179
Identities = 412/448 (92%), Gaps = 0/448 (0%)
Strand=Plus/Plus
Query 306 GTTTTCATTCGAGAAGATTCTCAAGAGTGAGATTTTCGCTATAGTTCTCGAGATGCAGAT 365
|||||| ||||||||| ||||||||||||||| | || |||| |||||||||||||| ||
Sbjct 630 GTTTTCTTTCGAGAAGGTTCTCAAGAGTGAGACTCTCTCTATGGTTCTCGAGATGCAAAT 689
Query 366 CTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCAAGCGGGGAATG 425
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 690 CTATACGTCGCTTGTGGCTTCTTGTGTAGCGGTTATCGGATTGTTCGCAAGCGGGGAATG 749
Query 426 GCTGTTGTTGAGTGAGGAGATGGAAGAGTTTCAGGAGGGTCAAGTCATTTATGTTTTGAC 485
| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 750 GATGTTGTTGAGTGTGGAGATGGAAGAGTTTCAGGAAGGTCAAGTCATTTATGTTTTGAC 809
Query 486 TTTGGTTGGGACAGCGGTGTCGTGTCAATTGGGTTCTGTAGGATCCGTGGCGCTTATATT 545
|||||| ||| ||||||| |||||||||||||||| ||||||| ||||| ||||||||||
Sbjct 810 TTTGGTCGGGGCAGCGGTTTCGTGTCAATTGGGTTGTGTAGGAGCCGTGTCGCTTATATT 869
Query 546 TCTGGTGTCGTCGCTGTTCTCGAACCTTATTGGTACACTCTCACTCATTGTAACGCCTCT 605
||||||||| |||||||| || ||||||||| |||| |||||||||||||| ||||||||
Sbjct 870 TCTGGTGTCTTCGCTGTTTTCAAACCTTATTAGTACGCTCTCACTCATTGTTACGCCTCT 929
Query 606 TGCTGCCATTGCCGTGTTCCACGACAAGCTGACTGAGGTTAAGATTGTCGCGATGCTCAT 665
|| |||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||
Sbjct 930 CGCGGCCATTGCGGTGTTCCATGACAAGCTGACTGAGGTTAAGATGGTGGCGATGCCCAT 989
Query 666 TGCCTTCACAGGATTCGCGTTTTATATCTACCAGAATTATCTTGATGACTTGAAAGTACA 725
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 990 CGCCTTCACAGGATTCACGTTTTATATCTACCAGAACTATCTTGATGACTTGAAAGTACA 1049
Query 726 AAGAGCACGAGAAGCTCAAGCCGAATGA 753
|||||||||||||||||| |||||||||
Sbjct 1050 AAGAGCACGAGAAGCTCAGGCCGAATGA 1077
Score = 401 bits (217), Expect = 4e-111
Identities = 282/312 (90%), Gaps = 10/312 (3%)
Strand=Plus/Plus
Query 1 ATGTTGCTGCTAAAGGAAGAAGATGAGGGAAGAGGAAGAACTAGTGTTCCTACACAACTC 60
||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTTGCTGCTTAAGGAAGAAGATGAAGGAAGACGAAGAACTAGTGTTCCTACACAACTC 60
Query 61 ATGAAACTAAA-ACGAACCCATTGGTGGATTCTTGTCTTCATAAGTATCTTCTTCCTCAT 119
||||||||||| | ||| ||| |||||||||||||| |||||||| |||||||| |||||
Sbjct 61 ATGAAACTAAATA-GAAGCCAATGGTGGATTCTTGTTTTCATAAGCATCTTCTTTCTCAT 119
Query 120 CTCTGCTCAAGCCATTGGTGTTCTGCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAG 179
|||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||
Sbjct 120 CTCTGCTCAAGCCATTTCTGTTCTTCTTGGTCGGTTTTATTACAATGAAGGTGGAAACAG 179
Query 180 TAAATGGATCTCCACTCTTGTCCAAACCTG-TGGctttccgattctttatctccctcttt 238
|||||||||||| |||||||| ||||| || ||||||||| |||||||||||||||||||
Sbjct 180 TAAATGGATCTCTACTCTTGTTCAAAC-TGGTGGCTTTCCCATTCTTTATCTCCCTCTTT 238
Query 239 gtatccttccttcttcaaaatcttcttcttcattttcttcttcttcttcttcttctttcA 298
| |||||||| ||||| ||||||||||||| || |||||||||||||||||| | ||
Sbjct 239 CTCTCCTTCCTGCTTCACAATCTTCTTCTTC-TT--CTTCTTCTTCTTCTTCTT-T--CA 292
Query 299 AGACTCTGTTTT 310
|||||||| |||
Sbjct 293 AGACTCTGGTTT 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5