BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352012
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09450.1 | Symbols: | Duplicated homeodomain-like superfami... 580 4e-165
AT3G10580.1 | Symbols: | Homeodomain-like superfamily protein ... 403 9e-112
> AT4G09450.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr4:5983277-5984531 FORWARD LENGTH=634
Length=634
Score = 580 bits (314), Expect = 4e-165
Identities = 514/606 (85%), Gaps = 31/606 (5%)
Strand=Plus/Plus
Query 1 ATGGCCGCGGCTCCGCAGTGGACGAGGGCCGATGAC-AAGGATTTTGAGTCAGCTCTGGT 59
||||||||| |||||||||||| |||| ||||||| || | |||||||| ||||||| |
Sbjct 1 ATGGCCGCGTTTCCGCAGTGGACAAGGGTCGATGACAAACG-TTTTGAGTTAGCTCTGCT 59
Query 60 T-ATATTCCCGGAGGGTTCGCCGTATTTTTTAGAGAATATCG-CTCA-AACTCTGAAGAA 116
| | | ||||||||||||||||| ||||| |||||||||||| || | | ||| ||||
Sbjct 60 TCA-AATCCCGGAGGGTTCGCCGAATTTTATAGAGAATATCGCCT-ATTA-TCTCCAGAA 116
Query 117 AACGGTGGACGAGGT-GAATAACCACTACAACACGTTGGTCCACGATGTTGATCTGATCG 175
| ||||| | ||||| || | || ||||| | |||||||||| ||| |||| | |||||
Sbjct 117 ACCGGTGAAGGAGGTGGAGT-ACTACTACTGCGCGTTGGTCCATGATATTGAGCGGATCG 175
Query 176 AATCGGGTAAGTTTGTTTTGCCCAAATACCCGGACGACGATTACGTGACACTGACGGAAG 235
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 176 AATCGGGTAAGTATGTTTTGCCCAAATACCCGGAAGACGATTACGTGAAACTGACGGAAG 235
Query 236 CAAGTCCGTCCAGAAAC-AAGGGCACTGGGAAAAAGAATGGAATTCCATGGTCACAAAAT 294
| || || || | ||||||| ||||||||||| |||||||| |||||| || |
Sbjct 236 C-AG---GT---GAGTCTAAGGGCAATGGGAAAAAGACGGGAATTCCTTGGTCAGAAGAG 288
Query 295 GAACACAGGTTGTTTCTGGAAGGACTAAATAAGTTTGGGAAAGGAGACTGGAAGAACATA 354
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GAACAGAGGTTGTTTCTGGAAGGACTAAATAAGTTTGGGAAAGGAGACTGGAAGAACATA 348
Query 355 TCGAGGCATTGTGTGAAGTCAAGGACATCGACGCAAGTGGCAAGCCATGCTCAGAAGTAT 414
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 349 TCGAGGTATTGTGTGAAGTCAAGGACCTCGACGCAAGTGGCAAGCCATGCTCAGAAGTAT 408
Query 415 TT--CAATAGGCTAAAA-CGGGGGATTACGGATGGGAAACGCTCGAGTATCCATGACATG 471
|| ||| ||| |||| | || || |||| || |||||| ||||||| |||||||||
Sbjct 409 TTTGCAA--GGC-AAAAGCAGGAGAGTACGAATACTAAACGCCCGAGTATTCATGACATG 465
Query 472 ACTCTGGGAGATGTGGAAAATGTCCCAGGATCCAACTTG-ACGTGTA-TGGACCAGCAGC 529
|||||||||| || || |||||||| |||||||||||| | || || ||| |||||| |
Sbjct 466 ACTCTGGGAGTTGCGGTCAATGTCCCTGGATCCAACTTGGA-GTCTACTGG-CCAGCAAC 523
Query 530 CACATTTTGGTGACCAAATTTCTTGGAATCAATGTTA-CCTCTCCCAGGAAAACTTTCCG 588
||||||||||||| |||||| ||| |||||||| ||| || ||||||||||||||||| |
Sbjct 524 CACATTTTGGTGATCAAATTCCTTCGAATCAATATTATCC-CTCCCAGGAAAACTTTCGG 582
Query 589 G-TTTT 593
| ||||
Sbjct 583 GGTTTT 588
> AT3G10580.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:3307051-3308233 REVERSE LENGTH=899
Length=899
Score = 403 bits (218), Expect = 9e-112
Identities = 444/548 (81%), Gaps = 35/548 (6%)
Strand=Plus/Plus
Query 19 TGGACGAGGGCCGATGACAAG-GATTTTGAGTCAGCTCTGGTTATATTCCC-G--GAGGG 74
|||| ||||| |||||| ||| | |||||||| |||||||||| |||||| | |||||
Sbjct 25 TGGAAGAGGGACGATGATAAGCG-TTTTGAGTTAGCTCTGGTTCGATTCCCTGCTGAGGG 83
Query 75 TTCGCCGTATTTTTTAGAGAATATCGCTCAAACTCTGAAGAAAACGGTGGACGAGGTGAA 134
||||||| |||||||||||||||||||||| |||| ||||| || | | ||||||
Sbjct 84 TTCGCCGGATTTTTTAGAGAATATCGCTCAGTTTCTGCAGAAACCGTTAAAGGAGGTG-- 141
Query 135 TA-ACC-ACTA-CAACACGTTGGTCCACGATGTTGA-TCTGATCGAATCGGGTAAGTTTG 190
|| || |||| ||| | |||||| | |||||| | ||||||||||||||||||| |
Sbjct 142 TACTCCTACTACCAA-GCCTTGGTCGATGATGTT-ACGCTGATCGAATCGGGTAAGTATC 199
Query 191 TTTTGCCCAAATACCCGGACGACGATTACGTGACACTGACGGAAGCAAGTCCGTCCAGAA 250
||||||||| |||||||| || ||||||||| ||||| ||||||| | | ||| | ||
Sbjct 200 CTTTGCCCAAGTACCCGGAAGATGATTACGTGTCACTGCCGGAAGCGACTAAGTCTA-AA 258
Query 251 A-CAAGGGCACTGGGAAAAAGAATGGAATTCCATGGTCA-CAAAATGAACACAGGTTGTT 308
| | ||||||| ||||||||||| ||||| || |||||| || || |||||||| |||||
Sbjct 259 ACCCAGGGCACGGGGAAAAAGAAGGGAATACCTTGGTCACCAGAA-GAACACAGATTGTT 317
Query 309 TCTGGAAGGACTAAATAAGTTTGGGAAAGGAGACTGGAAGAACATATCGAGGCATTGTGT 368
| |||| |||||||| |||| |||||||||||| ||||||| |||||||||| | |||||
Sbjct 318 TTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCATATCGAGGGAATGTGT 377
Query 369 GAAGTCAAGGA-CATCGACGCAAGTGGCAAGCCATGCTCAGAAGTATTTCAATA-GGCTA 426
|| |||||||| | ||| ||||||||||||||||||||||||||||||| || ||| |
Sbjct 378 GACGTCAAGGAGC-CCGATGCAAGTGGCAAGCCATGCTCAGAAGTATTTCT-TAAGGCAA 435
Query 427 AAACGGGGGATTACGGATGGGAAACGCT-CGAGTATCCATGACATGACTCTGGGAGATGT 485
||| || | | | |||||||||| | ||||||||||| ||||||||||||||||
Sbjct 436 AAAA-----ATAA-GAAGGGGAAACGCTTC-AGTATCCATGATATGACTCTGGGAGATGC 488
Query 486 GGAAAATGT--CC--CAG-G-ATCCAACTTGACGTGTATGGACCAGCAGCCACATTTTGG 539
|||||||| || | | ||||||||||| | ||||| |||||||||||||||||
Sbjct 489 CGAAAATGTAACCGTCCCTGTATCCAACTTGAATTCTATGGGCCAGCAGCCACATTTTGA 548
Query 540 TGACCAAA 547
||||||||
Sbjct 549 TGACCAAA 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5