BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352052
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT2G10260.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 191 2e-47
> AT2G10260.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: Ulp1 protease family protein (TAIR:AT5G45570.1);
Has 598 Blast hits to 556 proteins in 152 species: Archae -
0; Bacteria - 266; Metazoa - 60; Fungi - 10; Plants - 112;
Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). |
chr2:3938527-3941240 FORWARD LENGTH=1644
Length=1644
Score = 191 bits (103), Expect = 2e-47
Identities = 344/452 (76%), Gaps = 49/452 (11%)
Strand=Plus/Plus
Query 1 ATGTACCCTCAATGGAGTAATGCGGAGGAGGATAAGGATCCAGCA-CTAGACAACTTGAT 59
||||||| |||||||||| |||| || || ||||||||| | | || |||||||||||
Sbjct 424 ATGTACCTTCAATGGAGTGATGCAGAAGAAGATAAGGAT-GTGAAGCTTGACAACTTGAT 482
Query 60 AAAAGACATCATCCATAATCGA-TTGGCTTTAGATGCTTGGAAAGGTGTGCCAGC-TTTT 117
|||||||||||||||||||| ||| |||||||||||||||||| ||||| || ||||
Sbjct 483 AAAAGACATCATCCATAATCTTCTTG-CTTTAGATGCTTGGAAAGATGTGCAAGTATTTT 541
Query 118 GG-TGTGTCTAAGAAGAAACGCAAAGTAAAAGCTACTGTTGATGAAG-GTA-GTAGCACA 174
| | || |||||| | || || |||||||| ||| | | | | | | ||| ||||
Sbjct 542 GCAT-TG-CTAAGA-GTAA---AAC--AAAAGCTATTGTGGCT-A-GCGAAAGTATCACA 591
Query 175 CAG-AAGGGgaaa-aagatcaaaaaagctgaattttctggcgaagaaagagtcaaaattc 232
| ||||||||| ||| | | | || |||| ||| || || | | |||| |
Sbjct 592 -ATCAAGGGGAAACAAGTT-ATGGAGGCCGAATCTTC-----AA-AA-GT-TGAAAA--C 639
Query 233 aaaaagaagaCGAGAAGATAGTCTCAGAAGATATACAGGTTGACAAGGATGACAAGAA-A 291
|||||| | ||||||||||||||||||||| | ||||||| |||||||| ||||| |
Sbjct 640 AAAAAG----C-AGAAGATAGTCTCAGAAGATAAAGAGGTTGATAAGGATGAGAAGAATA 694
Query 292 GGCTTCT-CTGATATTTTATTGATGATGGAAAAAA-TGAATGGGAGTATTGT-AGACATG 348
| ||| | | |||||| || | ||||| |||| | |||||| || |||| | |||| ||
Sbjct 695 G-CTT-TGCGGATATTCTAAAGGTGATG-AAAACACTGAATGAGACTATT-TCAGACGTG 750
Query 349 GGTAAGAATCTGAGTAGTAGGATCGATGACT-TGGAGAATACCTTTGACTCACAAATTGT 407
|| |||||||||||| ||| |||||||| || || ||| || ||||| || || |||||
Sbjct 751 GGCAAGAATCTGAGTTGTAAGATCGATG-CTATGCAGACTAGATTTGAGTCTCAGATTGT 809
Query 408 AGCAGTTGAGACT-GATTTGAAGGAACTGAAA 438
||| |||||| | || || ||||||||||||
Sbjct 810 TGCATTTGAGA-TAGAGTTAAAGGAACTGAAA 840
Score = 113 bits (61), Expect = 4e-24
Identities = 91/106 (86%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 537 GTCTTGGAAAGTAGAGGAGAAGCCATCTTCAGTGGATGGTTTGCCTGTTCAAAGAGTGGT 596
||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 843 GTCTTCGAAAGTAGAGGAGAAGCCATCTTCAGTGGATGGTTTACCTATTCAAAGGGTGGT 902
Query 597 GAAGAAAACTTATACTGTTCAGAAGAAAGTAAAGAAAGAAGGTGAA 642
|| ||| || | || || ||||| ||| ||||| ||||||||||
Sbjct 903 AAATAAACCTAAAACAGTGCAGAAAAAAATAAAGGTAGAAGGTGAA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5