BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352054

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09830.1 | Symbols:  | Uncharacterised conserved protein UCP...   928    0.0  


> AT4G09830.1 | Symbols:  | Uncharacterised conserved protein UCP009193 
| chr4:6188767-6190853 FORWARD LENGTH=937
Length=937

 Score =  928 bits (502),  Expect = 0.0
 Identities = 552/576 (96%), Gaps = 3/576 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTAAGAAGAGAAAATCTACAGCGACGAGCCTCGATGAGGTAGATCGGACTGTTTAC  60
            ||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct  100  ATGGGGAAGAAGAGAAAATCAACAGCCACAAGCCTCGATGAGGTAGATCGGACTGTTTAC  159

Query  61   GCTTCTTTTCGCACCGCCGCTAACTCTTTATCTCAGCTTTATACTCAGTCTATGAATCAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  160  GCTTCTTTTCGCACCGCCGCTAACTCTTTATCTCAGCTTTATACTCAGTCTATGAATCAT  219

Query  121  CAGAAACTATCTTTTCAAGCCGGTGAACGCCATGGTTTGGAAAAACTGTACCAATGGATA  180
            |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  220  CAGAAGTTATCTTTTCAAGCCGGTGAACGCCATGGTTTGGAAAAACTGTACCAATGGATA  279

Query  181  TGGAGACAACAAGAAGGAGGGTCAAGAGTGACACCTATGGATATTGTCAATTATATTCAG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  TGGAGACAACAAGAAGGAGGGTCAAGAGTGACACCTATGGATATTGTCAATTATATTCAG  339

Query  241  AACGAGCTCGAATGCTGCATAGACGAGCCTCCAATATCTCCAAGAGCGCCACCAACGCAA  300
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  340  AACGAGCTCGAATGCTGCATAGACGAGCCTCCAATATCCCCAAGAGCGCCACCACCGCAA  399

Query  301  CCAACAATGCATGTCACAAATTCCGGGCTCATGGCCACTTCAGGTACTTCTTTCCCAACA  360
            ||||||||||||||||| ||| ||||||||||| |||||||||| || ||||||||||||
Sbjct  400  CCAACAATGCATGTCACGAATCCCGGGCTCATGACCACTTCAGGCACCTCTTTCCCAACA  459

Query  361  CCTGTTCCAGTGGTTCGGTCTGAGCAATGTGAGAACCAGGCCAAGAACTCGGTTTTTTCA  420
             |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct  460  GCTGTTCCAGTGGTTAGGTCCGAGCAGTGTGAGAACCAGGCCAAGAACTCGGTTTTCTCA  519

Query  421  AACGCACTTTCCAGCCCAATCCGGCGTAGTCTTCAGAACTACCAAATTCCGCAGGGAGGC  480
            ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  520  AACGCACTTTCAAGCCCAATACGGCGTAGTCTTCAGAACTACCAAATTCCGCAGGGAGGC  579

Query  481  TACACATCTGGCGGAACCA---GAAGCAGTGAAGTGAACAGGGGATCTAACTCTCCAGGT  537
            |||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct  580  TACACATCCGGCGGAACCACCAGAAGCAGTGAAGTGAACAGGGGATCTAACTCTCCAGGT  639

Query  538  TCTATTGATTCTTCAATGGACATGCATGCAGAATAA  573
            ||||||||||||||||||||||||||||||||||||
Sbjct  640  TCTATTGATTCTTCAATGGACATGCATGCAGAATAA  675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5