BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352125
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10500.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1517 0.0
> AT4G10500.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:6491017-6492476
FORWARD LENGTH=1256
Length=1256
Score = 1517 bits (821), Expect = 0.0
Identities = 978/1054 (93%), Gaps = 9/1054 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACTTCTGCAACATCTAAGCTCTTAGTGTCTGATTTCGACTCCTCCGTTAGTCAC 60
|||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||
Sbjct 73 ATGGCAACTTCTGCAATATCTAAGCTCTTAGTGTCTGATTTCGCCTCCTCCG-T--TCAC 129
Query 61 ATCCCTTCAAACTATGTCCGACCAATCTTGGACCGTCCAAACTTGTCCGAGGTCGAGAGT 120
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 130 ATCCCTTCAAACTATGTCCGACCAATCTCCGACCGTCCGAACTTGTCCGAGGTCGAGAGT 189
Query 121 TCCAGCGATTCCATCCCTCTAATCGATCTCCGGGAGCTTCATGGACCTAATCGAGCCG-A 179
|| |||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
Sbjct 190 TCTGGCGATTCCATCCCTCTGATCGATCTCCGGGACCTCCATGGACCTAATCGAGCCGTA 249
Query 180 AGTTGTCCAGCAACTTGCTATTGCTTGTTCCACTTATGGTTTCTTTCAGATCAAGAATCA 239
| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 250 A-TTGTCCAACAACTTGCTAGTGCGTGTTCCACTTATGGTTTCTTTCAGATCAAGAATCA 308
Query 240 TGGAGTACCGGATACAACCAT-AGATAAAATACTAACCGTAGCAAGAGAGTTCTTCCATC 298
||||||||| ||||||||| | | ||||||| | |||||| || ||||||||||||||||
Sbjct 309 TGGAGTACCAGATACAACCGTCA-ATAAAATGCAAACCGTTGCGAGAGAGTTCTTCCATC 367
Query 299 AACCCGAAAGCGAAAGAGTCAAACACTACTCGGCCGATCCAACAAAGACGACGAGGGTCT 358
||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 368 AACCCGAGAGCGAAAGAGTCAAACACTACTCCGCAGATCCAACAAAGACAACGAGACTCT 427
Query 359 CCACCAGTTTCAACATCGGCGCAGACAAAATCTTGAATTGGAGAGACTTCCTTAGACTCC 418
|||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 428 CCACCAGTTTCAACGTCGGCGCAGACAAAGTCTTGAACTGGAGAGACTTCCTTAGACTCC 487
Query 419 ATTGCTTTCCCATTGAAGATTTCATTGAAGAATGGCCTA-CTAGTCCCAACTCTTTCAAA 477
||||||||||||| ||||||||||| ||||||||||| | ||||||||| |||||||| |
Sbjct 488 ATTGCTTTCCCATAGAAGATTTCATCGAAGAATGGCC-ATCTAGTCCCATCTCTTTCAGA 546
Query 478 GAAGTAACAGCTGAATACGCGACAAGCGTAAGAGCTTTGGTTTTGAGACTTCTTGAAGCC 537
||||| ||||||||||| || || |||||||||||||||||||||||||||||||| |||
Sbjct 547 GAAGTCACAGCTGAATATGCCACGAGCGTAAGAGCTTTGGTTTTGAGACTTCTTGAGGCC 606
Query 538 ATCTCAGAGAGCTTAGGCCTTGAAAGCGATCATATAAGCAATATATTAGGCAAACACGCT 597
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 607 ATCTCAGAGAGTTTAGGCCTTGAAAGCGACCATATAAGCAATATATTAGGCAAACACGCT 666
Query 598 CAACACATGGCCTTTAATTACTATCCACCATGTCCCGAGCCCGAGCTAACTTACGGACTT 657
||||||||||| ||||| |||||||| || ||||| || |||||||||||||||||||||
Sbjct 667 CAACACATGGCGTTTAACTACTATCCGCCGTGTCCAGAACCCGAGCTAACTTACGGACTT 726
Query 658 CCCGGACATAAAGACCCAACCGTTATCACTGTCCTTCTTCAAGACCAAGTCTCTGGTTTG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CCCGGACATAAAGACCCAACCGTTATCACTGTCCTTCTTCAAGACCAAGTCTCTGGTTTG 786
Query 718 CAAGTCTTTAAGGATAATAAGTGGGTCGCTGTTAATCCAATTCCCAACACTTTCATTGTC 777
||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 787 CAAGTCTTTAAGGATGATAAATGGGTCGCTGTTAGTCCAATTCCCAACACTTTCATCGTC 846
Query 778 AACATCGGCGACCAAATGCAGGTCATCAGCAACGATAAATACAAGAGTGTGCTCCACAGA 837
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 847 AATATCGGCGACCAAATGCAGGTCATAAGCAATGATAAATACAAGAGTGTGCTCCATAGA 906
Query 838 GCCGTAGTGAACACCGAGAAGGAGCGATTATCGATTCCGACATTCTATTTCCCTTCGACA 897
|||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct 907 GCCGTAGTAAACACCGAGAACGAGCGGTTATCGATTCCGACTTTCTATTTCCCTTCAACA 966
Query 898 GATGCAGTGATTGGTCCAGCACACGAGCTGATCAATGAACAAGACTCTCTTGCTGTTTAC 957
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 967 GATGCAGTGATTGGTCCAGCACACGAGCTGGTCAATGAACAAGACTCTCTTGCCATTTAC 1026
Query 958 AGAACCTTCCCATTTGTTGAGTATTGGGACAAGTTTTGGAACAGATCACTCGCTACTGCT 1017
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1027 AGAACCTACCCGTTTGTTGAGTATTGGGACAAGTTTTGGAACAGATCACTTGCTACTGCG 1086
Query 1018 AGCTGTCTCGACGCCTTCAAAGCTTCAACAACCT 1051
|||||||| ||||||||||||||| |||||||||
Sbjct 1087 AGCTGTCTAGACGCCTTCAAAGCTCCAACAACCT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5