BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352148

Length=996
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36920.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   713    0.0  


> AT1G36920.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; EXPRESSED IN: stem, male gametophyte, flower; 
EXPRESSED DURING: M germinated pollen stage, 4 anthesis; 
BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, 
OB-fold-like protein (TAIR:AT2G05642.1); Has 26 Blast 
hits to 23 proteins in 5 species: Archae - 0; Bacteria - 
4; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other 
Eukaryotes - 2 (source: NCBI BLink). | chr1:13983512-13984424 
FORWARD LENGTH=573
Length=573

 Score =  713 bits (386),  Expect = 0.0
 Identities = 405/414 (98%), Gaps = 1/414 (0%)
 Strand=Plus/Plus

Query  460  ATGAATGAAGTTAAGAGTATCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG  519
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAATGAAGTTAAGAGTCTCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG  60

Query  520  CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT  579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT  120

Query  580  GTCTACTCTAATATTAAATCCCAACCATCAGGTCCTGTTGTTT-TTCTTGGAAGTTTGAT  638
            |||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||
Sbjct  121  GTCTACTCTAATATTAAATCTCAACCATCAGGTCCCGTTTTTTCTTCTTGGAAGTTTGAT  180

Query  639  GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC  698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC  240

Query  699  TTATATCAATTCTCCACTACCAGAGATTCTTCAGTTTCAAGAAGCGTTGTGCAACGAAGA  758
            ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  241  TTATATCCATTCTCCACTACCAGAGATTCTTCGGTTTCAAGAAGCGTTGTGCAACGAAGA  300

Query  759  ACCAAGATTAGCTATTACTGAAATAATATCTTCAAAGTCGGCTCATATTTCCAAACAGTC  818
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  301  ACCAAGATTAGCTATTACTGAAATAAAATCTTCAAAGTCGGCTCATATTTCCAAACAGTC  360

Query  819  ATTTCACTTATCTGAAAGAAAAACAATCATCGAACTCATGGAAACTAACCAAGT  872
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  361  ATTTCACTTATCTGAAAGAAAAACAATCATTGAACTCATGGAAACTAACCAAGT  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48777356737


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5