BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352151
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10820.1 | Symbols: | F-box family protein | chr4:6648009-6... 292 4e-78
AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 119 6e-26
AT5G25290.1 | Symbols: | F-box family protein with a domain of... 95.3 1e-18
AT2G14290.1 | Symbols: | F-box family protein with a domain of... 86.1 6e-16
> AT4G10820.1 | Symbols: | F-box family protein | chr4:6648009-6648909
REVERSE LENGTH=822
Length=822
Score = 292 bits (158), Expect = 4e-78
Identities = 387/488 (79%), Gaps = 53/488 (11%)
Strand=Plus/Plus
Query 544 TACAATG-ATGTTGTATCCAACACTGATCTATTATCACCACTTTACCCAGCTTCTCATCC 602
||||||| || ||||| ||||||||||||||||| |||||| ||||| |||||||||| |
Sbjct 382 TACAATGAAT-TTGTAGCCAACACTGATCTATTACCACCACGTTACCTAGCTTCTCATTC 440
Query 603 GAGTAGTGATGATGAAACCACATATGATGGAG-CATTTTCTAGACATAACATTGCTGTTA 661
||||||||||||| || | ||| | || || ||| | || |||| |||||
Sbjct 441 GAGTAGTGATGAT--AA-GATGTAT--TCTAGCCA-----TAG--A-AATATTGTTGTTA 487
Query 662 CAACATCAGGAGAGGTTTTATTGGTCGAGAGCATCGTTTATGATGATTCCTCTGACTCTG 721
||||||||||||||||||| || ||||||||||||| || || ||| | ||
Sbjct 488 CAACATCAGGAGAGGTTTTGTTAGTCGAGAGCATCG-TT-TG-TGA-------G--TC-- 533
Query 722 AAATACCACCTATGATCGGCTTCCGCCTCTACAAGAAGGTTCCTAATCCAGATCCGGATG 781
| | | ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 534 ---T---A--GA--ATCGGCTTCCGCCTCTATAAGAAGGTTCCTAATCCAAATCCGGATG 583
Query 782 AG-TTTATATACAGACCGAAGGTGTCTGTTGAGGTAGATTCTCTAGGTGATGAGG-CTCT 839
|| ||| |||||| |||| | ||||||||||||||| ||||| |||| ||||||| || |
Sbjct 584 AGCTTT-TATACACACCGTATGTGTCTGTTGAGGTATATTCTTTAGGCGATGAGGCCT-T 641
Query 840 CCTTTTGGATTTAGGTATCACTGTGCCTGCTGACCATACACTTGGTATCCAACCAAACTC 899
| ||||||||||||||||| |||||||||||||||| | |||||||| | || |
Sbjct 642 TCGTTTGGATTTAGGTATCATTGTGCCTGCTGACCATCCCCTTGGTAT-----CGAA--C 694
Query 900 CATCTATTTCACCCGTCATGACCGTCTCCGTAACTGT-AAACTGAAACCTTCATGCCGGG 958
|||||||||||||||| | |||||| || ||||||| ||| | | |||||| ||||
Sbjct 695 CATCTATTTCACCCGTTACGACCGTGTCTATAACTGTGAAA-AGGATTTTTCATGTCGGG 753
Query 959 CCCGAGACATCTGTGTGTTCAATCTTGAAACAAAGAATGTCACACGCTTCCCTAGCCTCT 1018
|||| ||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 754 TCCGACACATCTGTGTGTTCAATCTTGAAACAAAGAAAATCACACGCTTCCCAAGTCTCT 813
Query 1019 CTTACTTA 1026
| |||||
Sbjct 814 CGCACTTA 821
Score = 134 bits (72), Expect = 2e-30
Identities = 78/81 (96%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 279 GAATGTGGTTAATCTGAGAGGTCTTTTGTGGGTAGATGAGAAGAAGAAAGAAGAATACAC 338
||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 285 GAATGTGGTTAATTTGAGAGGTCTTTTGTGGGTAGATGAGGAGAATAAAGAAGAATACAC 344
Query 339 TGTTGTGTGGTTTTTCGATAC 359
|||||||||||||||||||||
Sbjct 345 TGTTGTGTGGTTTTTCGATAC 365
> AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana
protein match is: F-box family protein with a domain
of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast
hits to 224 proteins in 5 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093
FORWARD LENGTH=1434
Length=1434
Score = 119 bits (64), Expect = 6e-26
Identities = 189/246 (77%), Gaps = 22/246 (9%)
Strand=Plus/Plus
Query 320 AGAAGAAAGAAGAATACACTGTTGTGTGGTTTTTCGATACGGGTGCCAG-TTATATAGCC 378
|||||||| ||||||||| ||| |||||||||||||| | ||| || | |||||||||
Sbjct 293 AGAAGAAAAAAGAATACATTGTAGTGTGGTTTTTCGACAAAGGTACC-GAATATATAGCC 351
Query 379 TTTTGCAAGAACGGGGAAGATCATTACCGT-AGCATTCC-A-ACAGATATCGATGTAATT 435
||||||||||||||||||||||||||||| | |||||| | || || | |||| ||
Sbjct 352 TTTTGCAAGAACGGGGAAGATCATTACCGCGA-CATTCCGATAC-GAAAAA-ATGT--TT 406
Query 436 CATAGACAGTTACGAGGCATATCTGATATGGTACTCC--GG-GGTGACATTCTTTATGTC 492
|| | |||||| || | ||| ||||||| |||||| || ||| ||| ||||||| ||
Sbjct 407 G-TAAAGAGTTACAAGACTTATATGATATGTTACTCCATGGTGGTAACAATCTTTATATC 465
Query 493 TTCAC-GATTCGACGATAC-ATTCG-A-GTCCTGGATTTGTCTGGACATGAAGGTTACAA 548
| || || ||| | || | ||||| | | | | ||||| | || | | ||||||| ||
Sbjct 466 T-CAAAGACTCGTCAAT-CTATTCGGAAG-CTTAGATTTTT-TGAAGAAGAAGGTTTCAT 521
Query 549 TGATGT 554
||||||
Sbjct 522 TGATGT 527
> AT5G25290.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr5:8778592-8779785 FORWARD
LENGTH=1194
Length=1194
Score = 95.3 bits (51), Expect = 1e-18
Identities = 112/139 (81%), Gaps = 13/139 (9%)
Strand=Plus/Plus
Query 290 ATCTGAGAGGTCTTTTGTGGGTAGATGAGAAGAAGAAAGAAGAATACACTGTTGTGTGGT 349
||||||||||||||||||||||||| | ||||||||||||| ||| |||||| ||||
Sbjct 479 ATCTGAGAGGTCTTTTGTGGGTAGA--CG-AGAAGAAAGAAGAGTACGTTGTTGTATGGT 535
Query 350 -TTTTCGAT-AC--GGGTGCCA--G-TTATATAGCCTTTTGCAAGAACGGGGAAGATCAT 402
|| || | || | | | | | || | |||||||||||||||||||||||||||||
Sbjct 536 ACTTCCG-TAACAAGTATACGATGGATTCTTTAGCCTTTTGCAAGAACGGGGAAGATCAT 594
Query 403 TACCGT-AGCATTCCAACA 420
|||||| || || ||||||
Sbjct 595 TACCGTGAG-ATGCCAACA 612
> AT2G14290.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:6057288-6058524 REVERSE
LENGTH=1237
Length=1237
Score = 86.1 bits (46), Expect = 6e-16
Identities = 86/105 (82%), Gaps = 4/105 (4%)
Strand=Plus/Plus
Query 142 GATTTCCACCGCGCTAAGATCGTGTGTACGAATTGGTACGTGTGCTCGAAACAAAC-GTT 200
||||| |||||||| ||||| || ||| ||| ||| || || | ||||| | ||| |||
Sbjct 106 GATTTTCACCGCGCGAAGATTGTTTGTTGGAACTGGAACTTGAGTTCGAAGCTAACAGTT 165
Query 201 GCACAAGAAAAGGAA-ATCTCCATGGCTGATGCTGTTTCCAGAAG 244
| |||||||| || |||||||||||||||||||||||||||||
Sbjct 166 -CCCAAGAAAA-TAAGATCTCCATGGCTGATGCTGTTTCCAGAAG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5