BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352174
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11040.1 | Symbols: | Protein phosphatase 2C family protein... 1170 0.0
> AT4G11040.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:6745161-6746698 FORWARD LENGTH=919
Length=919
Score = 1170 bits (633), Expect = 0.0
Identities = 809/894 (90%), Gaps = 12/894 (1%)
Strand=Plus/Plus
Query 1 ATGAAAACGGATATTACTCTACCCATAATCGCCGAAGACGGCGACTGTGGCGAGAGCAAG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAAAACGGATACTACTCTACCCATAATCGCCGAAGACGGCGACTGTGGCGACAGCAAG 60
Query 61 CGGGTAAGAGTGGCTGATCCGGGATTA-ACCGTCGGTGGTGAGGACAGACCTGTAAAATG 119
||||||||||||||||| | ||| || |||||||| ||| ||||||||||||||||||
Sbjct 61 AGGGTAAGAGTGGCTGATTCAGGA-TATACCGTCGGCGGTCAGGACAGACCTGTAAAAT- 118
Query 120 T-CCAAAAATTGAAGACAACGGAGATGTTGGGACATCAGAAGGAACACACCTCTTT-GTC 177
| |||||||| ||| |||| |||||||||||||||||||||||||||||| | ||| |||
Sbjct 119 TACCAAAAATCGAAAACAATGGAGATGTTGGGACATCAGAAGGAACACACGT-TTTAGTC 177
Query 178 GATGAACTAATGGCTGACGTGGCAATTAACGATAAAGACGGAAAAACAAACGCCGGCCAT 237
|||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 GATGCACTAATGGCCGAAGTGGCAATTAAAGATAAAGACGGAAAAACAAACGCCGGCCAC 237
Query 238 GGAGTAGTCTCAGTTATGGGACGGCAGAGAGCTATGACAACCGCCGTTTCCACCGTCGTT 297
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GGTGTAGTCTCAGTCATGGGACGACAGAGAGCTATGACAACCGCCGTTTCCACCGTCGTC 297
Query 298 GAGGAGATTCCATCTTATGACATTTTCGGAATCTTCCACGGTCTTAGGCTCGCTAAATTC 357
|| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 298 GACGAGATTCCGTCTTATGACATTTTCGGAATCTTCGACGGTCTTAGGCTCGCTAAATTC 357
Query 358 TTCGAGGACAGGCTTCGTCGCCTCGTTAAGGATGAGGTAAAAGCATGCCACAGCCGCGGG 417
|| ||||||||||| ||||| ||||| || || ||||| |||||||||||| |||| |||
Sbjct 358 TTTGAGGACAGGCTGCGTCGGCTCGTGAAAGAGGAGGTGAAAGCATGCCACGGCCGTGGG 417
Query 418 GTGGCGGCGGACTGGAATAAAGTTATGAAATCGTGTTTTTCGGAGGCCGTGGGGACAGTG 477
||||| |||||||||||||||||||||||||| |||||||| ||||| || ||||| |||
Sbjct 418 GTGGCTGCGGACTGGAATAAAGTTATGAAATCCTGTTTTTCCGAGGCGGTAGGGACGGTG 477
Query 478 GGGACCACCGCTACAAAAGCGGTGGTAACAATACTCGGAAAAGAGGAGGTGGTTGTGTTG 537
|| |||||| || | |||||||| || ||| ||||||||||||| ||| ||||||||
Sbjct 478 GGAACCACCACTTC---CGCGGTGGTTACGATAGTCGGAAAAGAGGAAGTGATTGTGTTG 534
Query 538 TGCCGTGGCGGAGCAAGGGTGGTTATATACTCTCACGGCGGAATTGCTTTGCCTATGTGC 597
||||||||||| |||||||||||| |||||||||||| |||| ||||||||||| | ||
Sbjct 535 TGCCGTGGCGGCGCAAGGGTGGTTTTATACTCTCACGACGGAGTTGCTTTGCCTCTCTGT 594
Query 598 CATATCCATCATCACAAGGATGGTGTAGAGCAAATCCTAAAGATCCATAAACGAAAAAAG 657
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 595 CATATCCATCATCACAAGGATGGTGTAGAGCAAATTCTAAAGATCCATAAACGAAAAAAG 654
Query 658 ATAGACGACTTCATAGTACTTGCATGCGATGGTCTATGGGACGTTGTCTCCGACGGTGAC 717
||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 ATAGACGACTTTATTGTACTTGCATGCGATGGTCTATGGGACGTTGTCTCCGACGATGAC 714
Query 718 ACATATCAGCTTGTCAAAAGTTGTCTTTATGGCAAATTACCA---GACAGATTTATCAGT 774
|||||||||||||| ||| |||||||||| |||||||||||| ||| | | ||| |||
Sbjct 715 ACATATCAGCTTGTGAAACGTTGTCTTTACGGCAAATTACCACCAGACGGGTGTATAAGT 774
Query 775 GAATCAAGCACGACAAAGGCTGCAGTGATACTGGCAGAGCTTGCTCTTGCAAGAGGAAGC 834
||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 775 GAATCAAGCTCGACAAAGGCTGCAGTGATATTGGCAGAGCTTGCAATTGCAAGAGGAAGC 834
Query 835 AAAGAGAATATAAACGTCATTGTTATTGATCTCAGAAGGTCTACCGTTTCTTAG 888
||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 835 AAAGAAAATATAAACGTTATTGTTATTGATCTCAAAAGCTCTACCGTTTCTTAG 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5