BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352198

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09580.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   448    5e-125
  AT4G11270.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   128    7e-29 


> AT5G09580.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G53345.1); 
Has 53 Blast hits to 53 proteins in 12 species: Archae - 0; 
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 50; Viruses 
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2972639-2974776 
FORWARD LENGTH=1520
Length=1520

 Score =  448 bits (242),  Expect = 5e-125
 Identities = 290/313 (93%), Gaps = 4/313 (1%)
 Strand=Plus/Plus

Query  119  TGACAAGGATTTGCTCAATAAAGGAACAACAAAAGAAGAGGCTTAAGATTTATGTTGATA  178
            ||| ||||||| ||| |||||||||| | || ||||||||||||||||||||||||||||
Sbjct  470  TGAAAAGGATTGGCTTAATAAAGGAAGAGCACAAGAAGAGGCTTAAGATTTATGTTGATA  529

Query  179  CTGGAACCAGTAGCTCAAAGGCTGTGTATAAGTATTTCTCCAGTAAACTCATAGATCAAA  238
            ||| ||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct  530  CTGAAACTAGTAGCTCAAAGGCTGTGTATAAATATTTCTCTAGTAAACTCACAGATCAAA  589

Query  239  GATCTTCCGAGGTAAAAGCTCTCAGTATGCTAAGTGTAGAAGACAAAACTCGGGTTGAAT  298
            ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  590  GATCTTCTGAGGTAGAAGCTCTCAGTTTGCTAAGTGTAGAAGACAAAACTCGGGTTGAAT  649

Query  299  CGGTTCTTGATTACATTGAGGATATCGATCTTCGACG-TCGGATGTTACCATATATCAAA  357
            |||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||
Sbjct  650  CGGTTCTTGATTACATTGAGGATATCGATCTTCGGCGAT-GGATGTTACCAGATATCAAA  708

Query  358  GCTTTCAGCTTTGGTCTTAAGGATTGGCGCTTAAGGATCAATTGTATTA-CTAATCCTTA  416
            ||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||
Sbjct  709  GCTTTCAGCTTTGGTCTTAAGGATTGGCGCTCAAGGATCAATTGTATCATC-AATCCTTA  767

Query  417  CATGTATGAACAG  429
            |||||| ||||||
Sbjct  768  CATGTACGAACAG  780


 Score =  335 bits (181),  Expect = 4e-91
 Identities = 225/245 (92%), Gaps = 8/245 (3%)
 Strand=Plus/Plus

Query  428   AGAAACTGCTAAAGCTGAATAAAGCTTTCAAGATCAGATTAGGAAGAGGGTTATATGGAG  487
             |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct  854   AGAAACTGCTAAAGCTGAATAAAGCTTTCAAGATTAGATTGGGAAGAGGGTTATATGGAG  913

Query  488   GGTGCCTGGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATG-----G-CAAGCTTC  541
              ||||||||||||||||||||||||||||||||||||||||||||     | ||||||||
Sbjct  914   AGTGCCTGGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTC  973

Query  542   TTAGTCTACAAAGTTCTGCAGCTGGTCTCAGGCCAATAG-AGGCTATTATATTTATGCAA  600
             |||||||||||||||||||||||||||| ||||| |||| || || ||| |||| |||||
Sbjct  974   TTAGTCTACAAAGTTCTGCAGCTGGTCTGAGGCCTATAGGAG-CTGTTACATTTGTGCAA  1032

Query  601   AGGAATAATCTCAAAATGTGCTTTAGAAGTACCGATGCTATAACCGACACATCCGAAATT  660
             ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||
Sbjct  1033  AGGAATAATCTCAAAATGTGCTTGAGAAGTACCGATGCTATAACCAATACATCCGAAGTT  1092

Query  661   GCTAA  665
             |||||
Sbjct  1093  GCTAA  1097


> AT4G11270.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:6854364-6859664 FORWARD LENGTH=4612
Length=4612

 Score =  128 bits (69),  Expect = 7e-29
 Identities = 106/122 (87%), Gaps = 9/122 (7%)
 Strand=Plus/Minus

Query  1    ATGAGATGGAGGAGCTCGAGACCAGAGGCAGGCCACGGATCGGCACTTCATCGGCACGAA  60
            |||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||  |||
Sbjct  148  ATGAGACGGAGGAGCACGAGACCATAGGCAGGCCACAGATCGGCACTTCATCGGCTTGAA  89

Query  61   TCAAGC---AC---CA---ACCGAGTCAGTGAACGAGTCGGGGTGAGAGAACAAGGAAGA  111
            ||||||   ||   ||   |||||||||||||||||||||||||||||||| ||||||||
Sbjct  88   TCAAGCGGTACAAGCATCGACCGAGTCAGTGAACGAGTCGGGGTGAGAGAAGAAGGAAGA  29

Query  112  AC  113
            ||
Sbjct  28   AC  27



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34008517519


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5