BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352229
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11580.1 | Symbols: | RNI-like superfamily protein | chr4:7... 235 6e-61
> AT4G11580.1 | Symbols: | RNI-like superfamily protein | chr4:7006648-7007738
REVERSE LENGTH=1002
Length=1002
Score = 235 bits (127), Expect = 6e-61
Identities = 368/478 (77%), Gaps = 42/478 (9%)
Strand=Plus/Plus
Query 259 AATCTTTTAATTAAGATGAGC-CAC--TTC-TTCTTTAACTTTTGTGAAGTA-AAAG--G 311
|||||||| | |||||| | | | | ||| ||| || |||||| ||||||| || | |
Sbjct 286 AATCTTTTGACTAAGATCATCTCTCGGTTCTTTC-TTGACTTTTTTGAAGTAGAAGGCAG 344
Query 312 CATAAAACTCCGGAATCTATTGA-TTGAGATCA-CTAAGTTGAGTCGCACGGCCCCAAAG 369
||||| ||| ||||||||| | ||||||||| | |||||||| |||| |||||| |||
Sbjct 345 CATAAGTCTCATGAATCTATT-AGTTGAGATCAGC-AAGTTGAGCCGCATGGCCCCCAAG 402
Query 370 AATTTATTCTTTAACTTTTATTCCAATATA-A--AAAAGCAGGATCTCATGTTTGTTGCT 426
||||| ||||||||||| ||||| ||||| | |||| || ||||| ||| | ||||
Sbjct 403 AATTTGTTCTTTAACTTCAATTCCTATATACAGGAAAA--TGG-TCTCAAGTTCGCTGCT 459
Query 427 GAGAGGATGCCAAACATAGAGAAGCTTGCTTTACCGGTTTCATGGTCACTGTGTAATGCG 486
|||| ||||||||| |||||||| ||||||||||| || |||| || | || |
Sbjct 460 GAGAAGATGCCAAATATAGAGAAACTTGCTTTACC--AATC-TGGT-GCTAT-CAAAAC- 513
Query 487 GTGAACTCATTTAGGTTTGCGTTTAGTCAGTGGAAGAATCTTAAAACACTGATCATGGCT 546
| ||| ||||| ||||||| || ||||| |||||||||||||||||| ||||||| |||
Sbjct 514 GAGAAGTCATTGCGGTTTGCATTCAGTCAATGGAAGAATCTTAAAACATTGATCATCGCT 573
Query 547 CAT-AATGACTTTTTCATCTGGCCGTACACATTTGAGTTTCGAGTTGTGGGAGAGAACTG 605
||| || ||| ||||| | || | | ||| || ||| || |||||| |||| |||
Sbjct 574 CATGAA-CACTCTTTCAGC-GG--G---AGATTCGACTTTAAAGCTGTGGGGGAGAGCTG 626
Query 606 CAGTAACCTGAA-TAACTTGAAGAT-TATGGGTTATTTGG-ATAACA-AAGATGCTGTGG 661
|||||||| || ||||| || || | ||||| ||||| | || | | | | | | ||
Sbjct 627 TAGTAACCT-AACCAACTT-AAAATATTTGGGTCGTTTGGAAGAATACACG-TCCAG-GG 682
Query 662 AAATCGTG-CGTTACCTCCAGAGCCTCAAGAGGTTGAGTTTACAATGCTCTTTGGTCA 718
|||| ||| | ||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 683 AAATAGTGTC-TTACCTCCATAGCCTCAAGAGGTTGAGTTTACGATGCTTTTTGGTCA 739
Score = 167 bits (90), Expect = 2e-40
Identities = 149/176 (85%), Gaps = 10/176 (6%)
Strand=Plus/Plus
Query 19 TCAAGAGAAGATTCAAAATGGGCA-ACTCTAGACAGAA-ACATACTTGCCA-TTATCTTC 75
||| |||||| |||| |||||||| | |||| ||| || ||||||||| | |||| |||
Sbjct 22 TCAGGAGAAGTTTCAGAATGGGCAGA-TCTAAACA-AAGACATACTTG-AACTTATTTTC 78
Query 76 GATAAGCTCGACATAATGGACATTACCATGGGAGCTTCACGTGTATGCATCTATTGGTTC 135
||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 79 AATAAGCTCGACGTGATGGACATTACCATGGGAGCTTCACGTGTCTGCATCTCTTGGTTC 138
Query 136 CTTGTCT-CTCACAACATAACTCTATGGAACACCATCGACCTCTCCAAGT-TCCAA 189
|||| || ||||||| | |||||| |||||||| |||||||| |||| | |||||
Sbjct 139 CTTG-CTTCTCACAATAAAACTCTGTGGAACACGGTCGACCTCACCAA-TCTCCAA 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5