BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352242
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 880 0.0
AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 763 0.0
> AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G54300.1);
Has 105 Blast hits to 105 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:1710013-1712165
REVERSE LENGTH=1548
Length=1548
Score = 880 bits (476), Expect = 0.0
Identities = 647/727 (89%), Gaps = 21/727 (3%)
Strand=Plus/Plus
Query 16 CCACTTCTAAACTTGCCTCTAACAACGACTCCGGAACTTATCAACAAGATTGAAACTTAC 75
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 70 CCACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTAC 129
Query 76 CTCAATAG-AAACTACACATGTCCTCATCAAAAAATAGAGAA--C-TCAAAGACCTCAAC 131
||||| || | |||||||||||||||||||| ||| |||||| | |||||||| |||||
Sbjct 130 CTCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAAC 188
Query 132 TCTTCCTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCAAAAT 191
|||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 189 TCTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGAT 248
Query 192 TGG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCAAAATTCTATTT 248
||| || || | | ||||| ||| ||||||||| || |||||||| |||||||||||
Sbjct 249 TGGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305
Query 249 TGCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAG 308
|||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||
Sbjct 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365
Query 309 GCTGAAAAGAAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTTA 368
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425
Query 369 TACACATGATGAAACTGGAATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 428
| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485
Query 429 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGATCGCGATTTCAC 488
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545
Query 489 CG-ACAATCAGGCTTCT-ACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTG 546
|| | | |||||||||| | || ||||||||||||| |||||||||||||||||||||||
Sbjct 546 CGGAGA-TCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTG 603
Query 547 CAAAAGAACTTGGAGAAACTTCTGACTAATAGCTTCTGGTCCAAACTCTACAACGTCCCT 606
||||||||||||||||| |||||||| | |||||||||||||||||||| || ||||||
Sbjct 604 CAAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCT 663
Query 607 TTCCCGGTAGAAGAATCTCTTTTCTTCGATATCGGCTTTAAAAACAATAACTCATCTCAC 666
||||||||| | |||||||||| ||||||||| |||||| ||||||| ||||||||| |
Sbjct 664 TTCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT-A- 721
Query 667 AACAGCCACAGCCAGACAGTTGGCTTTAATGTCAACTATGGCCTTCAACATCATCATTAT 726
| | |||||||| ||||||||||||| || |||||| |||||||||||||| | | || |
Sbjct 722 A-CGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-T 777
Query 727 TCTCAAG 733
|||||||
Sbjct 778 TCTCAAG 784
> AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G05770.1);
Has 107 Blast hits to 107 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses
- 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr1:20270810-20272106
FORWARD LENGTH=1042
Length=1042
Score = 763 bits (413), Expect = 0.0
Identities = 551/616 (89%), Gaps = 16/616 (3%)
Strand=Plus/Plus
Query 163 ATGAATTTCCCAATCTCCATGATCAAAATTGGAACATGGACCCCCGTTG-CAATAAACCC 221
||||||||||||||||||| ||||| ||||| |||| | ||||| ||| ||||||
Sbjct 1 ATGAATTTCCCAATCTCCACGATCAGGATTGGCGGATGGGTCGTCGTTGCCAA-AAACCC 59
Query 222 TGAAGATATTGTGGCAAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 281
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 119
Query 282 CGGAGAAGAAGAAACTAACATGCCAAGGCTGAAAAGAAAGATCGAGATTCAATGGAATGA 341
||||||| ||| ||||||| || ||||||||| | |||||||||||||||||||||||
Sbjct 120 CGGAGAACCAGAGACTAACACGCTGAGGCTGAAACGTAAGATCGAGATTCAATGGAATGA 179
Query 342 TGTCTCATCTTTTGAAGAGAGTATTTA-TACACATGATGAAACTGGAATCCTCAAAATCG 400
||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||
Sbjct 180 TGTCTCATCTTTTGAAGAGAGTA-TTAGTTCACGTGATGAAACTGGAATCCTCAAAATCG 238
Query 401 AGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACTC 460
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACTC 298
Query 461 AATGGAAACAGTTGGATCGCGATTTCACCG-ACAATCAGGCTTCTACTTGCAGGAGACAT 519
|||||||||| ||||||| ||||||||||| | | ||| ||||||| || ||||||||||
Sbjct 299 AATGGAAACAATTGGATCACGATTTCACCGGAGA-TCATGCTTCTAATTACAGGAGACAT 357
Query 520 ACAATTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAACTTCTGACTAATAGC 579
||| |||||||||||||||||||||||||||||||||||||||| ||| | || | |||
Sbjct 358 ACACTTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTGTAACCGACAGC 417
Query 580 TTCTGGTCCAAACTCTAC-AACGTCCCTTTCCCGGTAGAAGAATCTCTTTTCTTCGATA- 637
||||||||||||||||| || ||||||||||||||| | ||||||| || ||||||||
Sbjct 418 TTCTGGTCCAAACTCTATGAA-GTCCCTTTCCCGGTACATGAATCTCGTTACTTCGATAG 476
Query 638 TCGGCTTTAAAAACAATAACTCATCTCACAACAGCCACAGCCAGACAGTTGGCTTTAATG 697
| |||||| ||||||| |||||||| ||||||||||||||| |||||||||||||| |
Sbjct 477 T-GGCTTTGAAAACAA---CTCATCTCGCAACAGCCACAGCCACACAGTTGGCTTTAACG 532
Query 698 TCAACTATGGCCTTCAACATCATCATTATTCTCAAGGAATTGGTGGCGTGGGAGTGGGAG 757
||||| |||||| ||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 533 TCAACAATGGCCCTCAACATCA-C-TT-TTCTCAAGGAATTGGTGGCGTGGGAGTGGGAG 589
Query 758 AAGGAAACTTTAACAT 773
|||||||||||| |||
Sbjct 590 AAGGAAACTTTAGCAT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5