BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352250

Length=771
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39550.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   115    6e-25


> AT4G39550.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr4:18380526-18381905 REVERSE LENGTH=1380
Length=1380

 Score =  115 bits (62),  Expect = 6e-25
 Identities = 114/139 (82%), Gaps = 4/139 (3%)
 Strand=Plus/Plus

Query  569   ATTATGGCGGAAAGATTGCGGTTTTGTGGGAAAAGAAAGTG-CGTGCTATCGGCGGCTCT  627
             ||||||| |||||||| |||||||| ||||| ||||  ||| | | | || |  || | |
Sbjct  1023  ATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAGATTGTGACTTCCGAT-GATGGATGT  1081

Query  628   AACAAGAAGATGATTTGGTGTGCTGTGATTGCGCTTGAAAGGCGCAACA-CACAAGAGAT  686
             || || |||||||||| |||||||||||||||||||||||||||||||| |  |||||||
Sbjct  1082  AAGAACAAGATGATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAACAGCG-AAGAGAT  1140

Query  687   TTATGGGAAGATTGAGTGG  705
             ||  |||||| | ||||||
Sbjct  1141  TTGGGGGAAGGTCGAGTGG  1159



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37474673662


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5