BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352252

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18030.1 | Symbols:  | Protein phosphatase 2C family protein...   525    1e-148


> AT1G18030.1 | Symbols:  | Protein phosphatase 2C family protein 
| chr1:6204343-6206988 FORWARD LENGTH=1423
Length=1423

 Score =  525 bits (284),  Expect = 1e-148
 Identities = 385/432 (89%), Gaps = 14/432 (3%)
 Strand=Plus/Plus

Query  26    AGGTTTTTATTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCCTCTACTCCCA  85
             |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  617   AGGTTTTTGTTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCCTCTACTACCA  676

Query  86    GTGAGAT-GGGGAATCATATAGAAACATGTAATCCACTCAAAGGAATTCTTTTGACAAGA  144
               || || ||||||||||| |||| || ||||||||||||||| |||| ||||||| |||
Sbjct  677   ACGA-ATTGGGGAATCATACAGAAGCAGGTAATCCACTCAAAGCAATTGTTTTGACGAGA  735

Query  145   GAGCACAAAGCAATTTATCCACAGGAGCGTTCTCGCAGTCAAAAGTCAGGTGGTGTTATA  204
             ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct  736   GAGCACAAAGCAATTTATCCACAGGAGCGCTCTCGCATTCAAAAGTCAGGTGGTGTTATA  795

Query  205   AGCTCAAATGGACGGTTACAAGGGCGTCTTGATGTTTCTAGGGCTTTTGGTGATCGTCAA  264
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  796   AGCTCAAATGGACGGTTACAAGGGCGTCTTGAGGTTTCTAGGGCTTTTGGTGATCGTCAT  855

Query  265   TTCAACAAGTTTGGTGTCACTGCAACTCCGGACATTCATGCATTTGAATTAACCGAGAGA  324
             || || ||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||
Sbjct  856   TTTAAGAAGTTTGGTGTCAGTGCAACTCCAGACATTCATGCTTTTGAATTAACTGAGAGA  915

Query  325   GAAAACTTTATGATTCTTGGTTGCCATGGATTGTGGGAAGTATTTGGACCAAG-G-T--T  380
             |||||||| ||||||||||||||| |||||||||||||||| ||||||||||| | |  |
Sbjct  916   GAAAACTTCATGATTCTTGGTTGCGATGGATTGTGGGAAGTGTTTGGACCAAGTGATGCT  975

Query  381   -T-G--TT---C-AGAAACTCTTCAAGGAGGGCTTGCCTGTAAGCTCAATAAGTTGTCGT  432
              | |  ||   | ||||||| || ||||||||||||| ||||||| |  ||||| | |||
Sbjct  976   GTTGGATTTGTCCAGAAACTTTTGAAGGAGGGCTTGCATGTAAGCACGGTAAGTCGCCGT  1035

Query  433   CTTGTAAAAGAA  444
             ||||| || |||
Sbjct  1036  CTTGTGAAGGAA  1047



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5