BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352254
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2521 0.0
AT4G11700.1 | Symbols: | Protein of unknown function (DUF626) ... 82.4 1e-14
> AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD LENGTH=1701
Length=1701
Score = 2521 bits (1365), Expect = 0.0
Identities = 1585/1692 (94%), Gaps = 12/1692 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCAAAATCCCAGAAAACCCTCATTCTACTAGCAAATCTAATCAAGGTTCCTCCA 60
||||||||||||||||||||||||||| |||| ||||| ||| |||||||| ||||||||
Sbjct 1 ATGGCGGCAAAATCCCAGAAAACCCTCGTTCTGCTAGCGAATTTAATCAAGTTTCCTCCA 60
Query 61 TTAAAAGCTTTCTCTCTCTTAAATTCTCCAAATTTCCATGGATTTCAACACACACACGAA 120
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTAAAAGCTTTTTCTCTCTTAAATTCTCCAAATTTCCATGAATTTCAACACACACACGAA 120
Query 121 TCCATATCAATCCTTCTTCGTCTCCTTCTCTCTGGAAACTTATACTCTCACGCTCAATCA 180
|| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 121 TCAATCTCAATCCTTCTTCGTCTCCTTCTCTCTGGGAACTTATTCTCTCACGCTCAATCA 180
Query 181 CTTCTCCTTCAAGTAATCTCCGGAAAAATCCAATCCCAATTCTTCACATCTTCCTCTCTG 240
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTTCTTCTACAAGTAATCTCCGGAAAAATCCACTCCCAATTCTTCACATCTTCCTCTCTG 240
Query 241 CTACACTATTTGACAGAATCAGAAACGTCAAAAACCAAGTCTCGTCTCTACGAAGTAATC 300
|||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 241 TTACACTATTTGACAGAATCAGAAACGTCAAAAACAAAGTTTCGTCTCTACGAGGTAATC 300
Query 301 ATCAATGCCTATGTTCAATCTCAATCCCTAGA-TTCATCAATCTATTACTTCAACGAAAT 359
|||||| ||||||||||||||||||||||| | || |||||||| |||||||||||||||
Sbjct 301 ATCAATTCCTATGTTCAATCTCAATCCCTAAACTT-ATCAATCTCTTACTTCAACGAAAT 359
Query 360 GGTCGATAAGGGTTTTGTTCCTGGATCGAATTGCTTCAACAATCTCTTAACTTTCGTTGT 419
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 GGTCGATAATGGTTTTGTTCCTGGATCGAATTGCTTCAACTATCTCTTAACTTTCGTTGT 419
Query 420 TGGGTCTTCTTCTTTCAATCAATGGTGGTGTTTCTTCAACGAGAGCAAAATCAAAGTTGT 479
|||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 420 TGGGTCATCTTCTTTCAATCAATGGTGGAGTTTCTTCAACGAGAACAAAAGCAAAGTTGT 479
Query 480 TTTGGATGTGTATAGCTTTGGGATTGTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGA 539
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 TTTGGACGTGTATAGCTTTGGGATTCTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGA 539
Query 540 GAAAAGTTTTGATCTTCTTGTTGAATTAAGAGAGTTTGGGTTTTCTCCAAACGTTGTTAT 599
|||||| |||||||||||| ||||||| | ||||||||||||||||||||| || |||||
Sbjct 540 GAAAAGCTTTGATCTTCTTATTGAATTGACAGAGTTTGGGTTTTCTCCAAATGTAGTTAT 599
Query 600 CTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCGAAAGATTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCTAAAGATTT 659
Query 660 GTTTTTTGAGATGGGG-AAGTTCGGATTAGTGGCTAATGAGTGGACTTACACGGTTTTGA 718
|||||||||||||||| || || |||||||||||||||||| | ||||||||||||||||
Sbjct 660 GTTTTTTGAGATGGGGAAACTT-GGATTAGTGGCTAATGAGCGTACTTACACGGTTTTGA 718
Query 719 TTCATGGGTTATTCAAAAATGGGATTAAGAAACAAGGGTTTGAGATGTACGAGAAGATGC 778
|| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 719 TTAATGGGTTATTCAAAAACGGGGTTAAGAAACAAGGGTTTGAGATGTATGAGAAGATGC 778
Query 779 AGGAAGATGGTGTTTTCCCTAATCTCCATACTTATAACTGTGTGATGAATCAGCTTTGTA 838
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 AGGAAGATGGAGTTTTCCCTAATCTCTATACTTATAACTGTGTGATGAATCAGCTTTGTA 838
Query 839 AAGATGGAAGAACAAAAGATGCGTTTAAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTT 898
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 839 AAGATGGAAGAACAAAAGATGCATTCCAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTT 898
Query 899 CGTGTAATATTGTTACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGGCGA 958
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 CTTGTAACATTGTCACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGTTGA 958
Query 959 ATGATGCAAATGAGGTTATGGATCAGATGAAGAGTGATGGAATCAATCCGAATCTGATTA 1018
|||| |||||| | ||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 959 ATGAGGCAAATAAAGTTGTGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATTA 1018
Query 1019 CGTATAACACTTTGATTGATGGGTTTTGTGGTGTGAGAAAATTGGGGAAGGCGTTGAGTT 1078
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1019 CGTATAACACTTTGATTGATGGGTTTTGTGGTGTGGGAAAATTAGGGAAGGCGTTGAGTT 1078
Query 1079 TATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCTCTTGTCACGTATAATATTCTAG 1138
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1079 TATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCCCTCGTCACGTATAATATCCTAG 1138
Query 1139 TTTCCGGGTTCTGTAAG-AAAGGGGATACTTCAGGAGCAGGTAAGGTGGTTAAGGAGATG 1197
|||||||||||||| || ||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 1139 TTTCCGGGTTCTGT-AGAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGATG 1197
Query 1198 GAAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACGTTTGCT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 GAAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACATTTGCT 1257
Query 1258 CGTACGGATAACATGGAGAAAGCAATTCAGCTTCGATTATCAATGGAGGAACTAGGATTA 1317
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1258 CGTTCGGATAACATGGAGAAAGCAATTCAGCTTCGACTATCAATGGAGGAACTAGGATTA 1317
Query 1318 ACCCCGGATGTTCATACCTATAGCGTATTGATTCACGGGTTTTGCATCAAAGGTCGAATG 1377
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1318 GTCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAAATG 1377
Query 1378 AATGAAGCATCGAGGCTTTTTAAGTCGATGGTCGAAAAGAAGTT-TGAACCAAACGAGGT 1436
||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 1378 AATGAAGCATCTAGGCTTTTTAAGTCGATGGTCGAAAAGAA-TTGTGAACCGAACGAGGT 1436
Query 1437 GATATACAATACAATGGTTCTCGGGTATTGCAAGGAAGGTAGTTCTTATAGAGCATTGAG 1496
||||||||||| ||| |||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1437 TATATACAATACGATGATTCTTGGTTATTGTAAGGAAGGTAGTTCTTATAGAGCATTGAA 1496
Query 1497 GTTG-TTCAGGGAGATGGAAGAGAAAGAGTTGCCTCCAAATGTTGCTAGCTATAGGTATA 1555
|||| || ||| |||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 1497 GTTGCTTAAGG-AGATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTACAGATATA 1555
Query 1556 TGATTGAAGTTCTTTGTAAAGAACGAAAATCGAAAGAAGCTGAGGGTTTGGTTGAGAAGA 1615
||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 1556 TGATTGAAGTTCTTTGTAAAGAAAGAAAATCGAAAGAAGCTGAGCGTTTAGTTGAGAAGA 1615
Query 1616 TGATTGATTCAGGGATTGGTCCATCTGA-TTCAATCCTTAATTTGATCTCTAGAGCTAAA 1674
|||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||| |||
Sbjct 1616 TGATTGATTCAGGGATTGATCCATCT-ACTTCAATCCTTAGTTTGATCTCTAGAGCCAAA 1674
Query 1675 AATGATTCACAT 1686
|| |||||||||
Sbjct 1675 AACGATTCACAT 1686
> AT4G11700.1 | Symbols: | Protein of unknown function (DUF626)
| chr4:7058086-7058637 REVERSE LENGTH=552
Length=552
Score = 82.4 bits (44), Expect = 1e-14
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 1706 AGGAGCCAGCTTCCATGGTGTTTGATGGTTTGATGGTTTGTGAGCTC 1752
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 547 AGGAGCCAGCATCCATGGTGTTTGATGGTTTGATGGTTTGTGAGCTC 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5