BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352273
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11910.1 | Symbols: | INVOLVED IN: biological_process unkno... 1088 0.0
AT4G11911.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 922 0.0
> AT4G11910.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: non-yellowing 1 (TAIR:AT4G22920.1); Has 206 Blast
hits to 202 proteins in 67 species: Archae - 0; Bacteria
- 86; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr4:7156252-7158042
FORWARD LENGTH=1202
Length=1202
Score = 1088 bits (589), Expect = 0.0
Identities = 670/709 (94%), Gaps = 5/709 (1%)
Strand=Plus/Plus
Query 1 ATGTGTAGTTTGGCTACAAATCTGTTACTACCATCGAAGATGAAACCAGTTTTGCCAGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 184 ATGTGTAGTTTGGCTACAAATCTGTTACTACCATCGAAGATGAAACCAGTTTTTCCAGAG 243
Query 61 AAACTGAGCACTAGCTCACTCTGTGTCACCACTAGAAGATCTAAGATGAAGAACCGATCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AAACTGAGCACTAGCTCACTCTGTGTCACCACTAGAAGATCTAAGATGAAGAACCGATCT 303
Query 121 ATTGTTCCTGTTGCAAGATTGTTTGGACCGGCGATTTTTGAAGCCTCCAAATTGAAAGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ATTGTTCCTGTTGCAAGATTGTTTGGACCGGCGATTTTTGAAGCCTCCAAATTGAAAGTG 363
Query 181 TTATTCTTAGGAGTTGATGAGAAGAAGCATCCAGCAAAGCTCCCAAGAACTTACACTCTA 240
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 364 TTATTCTTAGGAGTTGATGAGAAGAAGCATCCAGCAAAACTTCCAAGAACTTACACTCTT 423
Query 241 ACTCACAGTGACATAACTGCTAAATTAACTTTAGCTATATCTCAATCCATTAATAACTCT 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ACTCACAGTGACATAACCGCTAAATTAACTTTAGCTATATCTCAATCCATTAATAACTCT 483
Query 301 CAGTTGCAAGGATGGGCGAATAAAGTGTTCCGGGACGAAATAGTGGCCGAGTGGAAGAAA 360
||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||
Sbjct 484 CAGTTGCAAGGATGGGCAAATAAATTGTTCCGGGACGAAGTAGTGGGCGAGTGGAAGAAA 543
Query 361 GTGAAAGGTAAAATGTCGCTTCATGTTCATTGCCACATTAGCGGAGGCCACTTCCTCTTG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 544 GTGAAAGGTAAAATGTCGCTTCATGTTCATTGCCACATTAGCGGAGGCCACTTCTTCTTG 603
Query 421 AATCTCATCGCGAAGCTTCGGTACTACATCTTTTGCAAAGAATTACCGGTGGTACTGAAA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 604 AATCTCATCGCGAAGCTTCGGTACTACATCTTTTGCAAAGAATTACCTGTGGTACTGGAA 663
Query 481 GCTTTTGTCCATGGAGATGAGTACTTGTTGAATAATTACCCTGAACTACAAGAATCTCTT 540
||||||| ||||||||||||||| ||||| |||||| |||| || ||||||||||||| |
Sbjct 664 GCTTTTGCCCATGGAGATGAGTATTTGTTAAATAATCACCCCGAGCTACAAGAATCTCCT 723
Query 541 GTTTGGGTTTATTTCCATTCAAACATCCCGGAGTACAATAAGGTCGAATGTTGGGG-CTC 599
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |
Sbjct 724 GTTTGGGTTTATTTCCATTCCAACATCCCGGAGTACAACAAGGTCGAATGTTGGGGAC-C 782
Query 600 GCTTTGGGAGGCTACATCACAGCACCAGCACGACGGAAATAGGAACCGCAAAAAGAGTCA 659
|||||||||||| | || ||||||||||||||||||| ||| || ||| |||||| |
Sbjct 783 GCTTTGGGAGGCCATGTCGCAGCACCAGCACGACGGAA---GGACCCACAAGAAGAGTGA 839
Query 660 AAATCTACCGGAGCTACCTTGCCCTGGTGAGTGCAAATGTTGCTTTCCG 708
|| |||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 840 AACTCTACCGGAGCTACCTTGTCCTGATGAGTGCAAGTGTTGCTTTCCG 888
Score = 457 bits (247), Expect = 2e-127
Identities = 494/611 (81%), Gaps = 25/611 (4%)
Strand=Plus/Plus
Query 712 GTTGCGAGACTGTTCGGACAGGCCATTTTCAAAGCTTCTAAACTGAATGTCATGTTTTTA 771
||||| ||| |||| |||| ||| ||||| |||| || ||| |||| || | || |||
Sbjct 313 GTTGCAAGATTGTTTGGACCGGCGATTTTTGAAGCCTCCAAATTGAAAGTGTTATTCTTA 372
Query 772 GGAGTTGATGAGAAGAAGCATCCATCAAATCTTCCAAGAACTTACACTCTCACTCATAGC 831
|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||
Sbjct 373 GGAGTTGATGAGAAGAAGCATCCAGCAAAACTTCCAAGAACTTACACTCTTACTCACAGT 432
Query 832 GACATAACCGCTAACTTAACTTTAGCTATTTCTCACTCTATCAATAACTCTCAGCTGCAA 891
|||||||||||||| |||||||||||||| ||||| || || |||||||||||| |||||
Sbjct 433 GACATAACCGCTAAATTAACTTTAGCTATATCTCAATCCATTAATAACTCTCAGTTGCAA 492
Query 892 GGATGGGGAAACAGGTTGTACCGGGATGAAGTAGTTGCCGAATGGAGGAAGGTGAAAAGT 951
||||||| ||| | |||| |||||| |||||||| | ||| |||| ||| |||||| ||
Sbjct 493 GGATGGGCAAATAAATTGTTCCGGGACGAAGTAGTGGGCGAGTGGAAGAAAGTGAAAGGT 552
Query 952 AAAATGTCGCTTCACGTTCACTGTCACATTAGTGGCGATCATTTTCTT-TTGGATCTCAT 1010
|||||||||||||| ||||| || |||||||| || | || ||||| ||| |||||||
Sbjct 553 AAAATGTCGCTTCATGTTCATTGCCACATTAGCGGAGGCCA-CTTCTTCTTGAATCTCAT 611
Query 1011 TGCGAAACTTCGTTACTTCATATTTTGCAAGGAATTACCGT-TGGTGTTAAAAGCTTTTG 1069
||||| ||||| |||| ||| |||||||| |||||||| | |||| | |||||||||
Sbjct 612 CGCGAAGCTTCGGTACTACATCTTTTGCAAAGAATTACC-TGTGGTACTGGAAGCTTTTG 670
Query 1070 TGTGTGGAGATGAGAACATGTTAAACAATTACCCTGAGCTACAGGACGCTTTTGTTTGGG 1129
|||||||||| | ||||||| ||| |||| |||||||| || || ||||||||
Sbjct 671 CCCATGGAGATGAGTATTTGTTAAATAATCACCCCGAGCTACAAGAATCTCCTGTTTGGG 730
Query 1130 TGTATTTCCATTCAAACATCCCGGAGTACAACAAGGTCGAATGTTGGGGTAC-GCTGTGC 1188
| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 731 TTTATTTCCATTCCAACATCCCGGAGTACAACAAGGTCGAATGTTGGGG-ACCGCTTTGG 789
Query 1189 GAGGCCACCTCGCA-C----G-ACGGTTGTAAG-AGCCACCCGT-G--TGAAAC-CTTAC 1237
||||||| ||||| | | ||| | ||| | |||| | | |||||| || ||
Sbjct 790 GAGGCCATGTCGCAGCACCAGCACGACGG-AAGGACCCACAAGAAGAGTGAAACTCT-AC 847
Query 1238 CGGAACCGCCTTG-CCTTGATAAGTGCA-GCTGTTG-TTTCCCGACGGTCAGCACGATCC 1294
|||| | ||||| ||| ||| |||||| | ||||| ||||| |||||| |||||||| |
Sbjct 848 CGGAGCTACCTTGTCCT-GATGAGTGCAAG-TGTTGCTTTCC-GACGGTTAGCACGATTC 904
Query 1295 CTTGGTCTCAT 1305
| |||||||||
Sbjct 905 CGTGGTCTCAT 915
> AT4G11911.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G11910.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr4:7158150-7159440 FORWARD LENGTH=822
Length=822
Score = 922 bits (499), Expect = 0.0
Identities = 633/696 (91%), Gaps = 16/696 (2%)
Strand=Plus/Plus
Query 712 GTTGCGAGACTGTTCGGACAGGCCATTTTCAAAGCTTCTAAACTGAATGTCATGTTTTTA 771
||||| ||||| ||||||||||| |||||| ||||||||||||||||||||| ||| |||
Sbjct 130 GTTGCAAGACTATTCGGACAGGCGATTTTCGAAGCTTCTAAACTGAATGTCAAGTTCTTA 189
Query 772 GGAGTTGATGAGAAGAAGCATCCATCAAATCTTCCAAGAACTTACACTCTCACTCATAGC 831
|||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 190 GGAGTTGATGAGAAGAAGCATCCACCGAATCTTCCAAGAACTTACACTTTCACTCATAGT 249
Query 832 GACATAACCGCTAACTTAACTTTAGCTATTTCTCACTCTATCAATAACTCTCAGCTGCAA 891
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 250 GACATCACCGCTAAGTTAACTTTAGCTATTTCTCACTCGATCAATAACTCTCAGCTACAA 309
Query 892 GGATGGGGAAACAGGTTGTACCGGGATGAAGTAGTTGCCGAATGGAGGAAGGTGAAAAGT 951
||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 310 GGATGGGCAAACAGGTTGTACCGAGACGAAGTAGTTGCCGAATGGAGGAAGGTGAAAAGT 369
Query 952 AAAATGTCGCTTCACGTTCACTGTCACATTAGTGGCGATCATTTTCTTTTGGATCTCATT 1011
|| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 370 AACATGTCGCTTCACGTTCATTGTCACATTAGCGGTGATCATTTTCTTTTGGATCTCATT 429
Query 1012 GCGAAACTTCGTTACTTCATATTTTGCAAGGAATTACCGTTGGTGTTAAAAGCTTTTGTG 1071
||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 430 GCGGAACTTCGTTACTTCATATTTTGCAAGGAGTTACCCATGGTGTTAAAAGCTTTTGT- 488
Query 1072 TG-TGGAGATGAGAACATGTTAAACAATTACCCTGAGCTACAGGACGCTTTTGTTTGGGT 1130
| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 489 TCATGGAGATGAGAACATGTTAAACAATTATCCTGAGCTACATGAAGCTTTTGTTTGGGT 548
Query 1131 GTATTTCCATTCAAACATCCCGGAGTACAACAAGGTCGAATGTTGGGGTACG-CTGTGCG 1189
|||||||||||| |||||||| ||| |||||||||||||||||||||| || || ||||
Sbjct 549 GTATTTCCATTCCAACATCCCCAAGTTCAACAAGGTCGAATGTTGGGGT-CGGCTATGCG 607
Query 1190 AGGCCACCTCGCACGACGGTTGTAAGAGC-CACC-CGTGTGAAACCTTACCGGAACCGCC 1247
|||||||||||||||| |||||||||| | | || ||||||||| |||||||||||||||
Sbjct 608 AGGCCACCTCGCACGATGGTTGTAAGA-CTC-CCACGTGTGAAATCTTACCGGAACCGCC 665
Query 1248 TTGCCTTGATAAGTGCAGCTGTTGTTTCCCGACGGTCAGCACGATCCCTTGGTCTCATTC 1307
|||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 666 TTGCTTTGATAAGTGCAGCTGTTGTTTTCCGACGGTCAGCACGATCCCCTGGTCTCATTC 725
Query 1308 TCATGAC---AGCCATGGTGAAGAGGATGATAGTGTAGCTATAGCCGGAGGGC-T-TGT- 1361
||||| | |||||||||||||||||| ||| ||||||||||||||||||| | | |
Sbjct 726 TCATGGCTGCAGCCATGGTGAAGAGGATAATAATGTAGCTATAGCCGGAGGGAATCTATT 785
Query 1362 GACTAAGTACATGTATAATCGAAATAAACA-AAAAT 1396
||| |||||||||||||| |||| |||| | |||||
Sbjct 786 GACCAAGTACATGTATAAGCGAAGTAAA-AGAAAAT 820
Score = 468 bits (253), Expect = 7e-131
Identities = 473/579 (82%), Gaps = 16/579 (3%)
Strand=Plus/Plus
Query 41 TGAAACCAG-TTTTGCCAGAGAAACTGAGCACTAGCTCACTCTGTGTC-ACCACTAGAAG 98
||||||||| |||| |||| ||| ||| | ||||||| || | || || ||||||||
Sbjct 41 TGAAACCAGATTTT-TCAGACAAAGAGAGAAGTAGCTCAATCCCT-TCAACTACTAGAAG 98
Query 99 ATCTAAGATGAAGAACCGATCTATTG-TTCCTGTTGCAAGATTGTTTGGACCGGCGATTT 157
|| |||| |||||| | ||||| || |||||||||||||| | || |||| ||||||||
Sbjct 99 TTCCAAGAGGAAGAAGCAATCTA-TGTTTCCTGTTGCAAGACTATTCGGACAGGCGATTT 157
Query 158 TTGAAGCCTCCAAATTGAAAGTATTA-TTCTTAGGAGTTGATGAGAAGAAGCATCCAGCA 216
| ||||| || ||| |||| || | |||||||||||||||||||||||||||||| |
Sbjct 158 TCGAAGCTTCTAAACTGAATGT-CAAGTTCTTAGGAGTTGATGAGAAGAAGCATCCACCG 216
Query 217 AAGCTCCCAAGAACTTACACTCTAACTCACAGTGACATAACTGCTAAATTAACTTTAGCT 276
|| || ||||||||||||||| | ||||| |||||||| || ||||| ||||||||||||
Sbjct 217 AATCTTCCAAGAACTTACACTTTCACTCATAGTGACATCACCGCTAAGTTAACTTTAGCT 276
Query 277 ATATCTCAATCCATTAATAACTCTCAGTTGCAAGGATGGGCGAATAAAG-T-GTTCCGGG 334
|| ||||| || || |||||||||||| | ||||||||||| || | || | || ||| |
Sbjct 277 ATTTCTCACTCGATCAATAACTCTCAGCTACAAGGATGGGC-AA-ACAGGTTGTACCGAG 334
Query 335 ACGAAATAGTGGCCGAGTGGAAGAAAGTGAAAGGTAAAATGTCGCTTCATGTTCATTGCC 394
||||| |||| ||||| |||| ||| |||||| |||| ||||||||||| |||||||| |
Sbjct 335 ACGAAGTAGTTGCCGAATGGAGGAAGGTGAAAAGTAACATGTCGCTTCACGTTCATTGTC 394
Query 395 ACATTAGCGGAGGCCACTTCCTCTTGAATCTCATCGCG-AAGCTTCGGTACTACATCTTT 453
|||||||||| | || || || ||| ||||||| ||| || ||||| |||| ||| |||
Sbjct 395 ACATTAGCGGTGATCATTTTCTTTTGGATCTCATTGCGGAA-CTTCGTTACTTCATATTT 453
Query 454 TGCAAAGAATTACCGGTGGTACTGAAAGCTTTTGTCCATGGAGATGAGTACTTGTTGAAT 513
||||| || ||||| |||| | ||||||||||| |||||||||||| || |||| ||
Sbjct 454 TGCAAGGAGTTACCCATGGTGTTAAAAGCTTTTGTTCATGGAGATGAGAACATGTTAAAC 513
Query 514 AATTACCCTGAACTACAAGAATCTCTTGTTTGGGTTTATTTCCATTCAAACATCCCGGAG 573
||||| ||||| ||||| ||| || |||||||||| ||||||||||| |||||||| ||
Sbjct 514 AATTATCCTGAGCTACATGAAGCTTTTGTTTGGGTGTATTTCCATTCCAACATCCCCAAG 573
Query 574 TACAATAAGGTCGAATGTTGGGGCTCG-CTTTGGGAGGC 611
| ||| ||||||||||||||||| ||| || || |||||
Sbjct 574 TTCAACAAGGTCGAATGTTGGGG-TCGGCTATGCGAGGC 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5