BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg352353 Length=1446 Score E Sequences producing significant alignments: (Bits) Value AT1G13120.1 | Symbols: | | chr1:4469181-4473213 REVERSE LENGT... 566 3e-160 AT4G05523.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 486 2e-136 > AT1G13120.1 | Symbols: | | chr1:4469181-4473213 REVERSE LENGTH=2427 Length=2427 Score = 566 bits (306), Expect = 3e-160 Identities = 548/661 (83%), Gaps = 31/661 (5%) Strand=Plus/Plus Query 690 TGCTTTGGCATTGGAGAAGCATAGATTGAAGAAGCTTGAAGAGTTAGAAGCAATGAACCA 749 ||||||| ||||||||| || |||||||| ||||| ||||| ||||| ||| |||||| Sbjct 1398 TGCTTTGATATTGGAGAACCACAGATTGAAAAAGCTCGAAGAACTAGAAACAACGAACCA 1457 Query 750 AGAGCTAAAATCACGTTTAAATCAGGACTTTAGGAGTTTTGA-AAGGAGTATTGGAAG-G 807 | ||| || ||||||| |||| | ||||||| |||||||| ||| | ||||||||| | Sbjct 1458 ATCGCTTAAGTCACGTTCAAATGAAAACTTTAGCAGTTTTGAGAAGCA-TATTGGAAGAG 1516 Query 808 TCGATAAGGCAGATAACTGGGGTAAAAGATACGGTG-GA-TGCGAAAATCAACGAAATCG 865 | ||||||||| |||| |||| ||| |||| ||| | || ||||||||| || || | Sbjct 1517 T-GATAAGGCAAATAAGTGGGACAAAGGATA--GTGTAAGTGGGAAAATCAATGATATTG 1573 Query 866 TCAAAGTATTTAAAGATCCTCGTTGTCCTTTATCCATCAGTATTGCAGCTTTTGCAAAGA 925 | ||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||||| Sbjct 1574 TGAAAATATTTAAAGACCCTCGTTGTCCGGTATCCATAAGTATTGCAGCTTTTGCAAAGA 1633 Query 926 GGATGGTCTCCTGT-AGG-----CAAAACCCTTTTGCATGCAGCTACATCATTGGTTATG 979 ||||||| || | ||| | ||||||||||||||||||||| |||||| ||| Sbjct 1634 AGATGGTCACCACTAAGGAAAAACCAAACCCTTTTGCATGCAGCTATGTCATTGTTTACA 1693 Query 980 TC-ACTTCGA-AGTTTCCACAAGCTATGGATATTCTTCTTGCTGAATTCCACAAAGCTTG 1037 || || || | ||||||| |||| ||||||||||||||| || ||||||||||||||||| Sbjct 1694 TCAAC-TC-ACAGTTTCCCCAAGTTATGGATATTCTTCTCGCGGAATTCCACAAAGCTTG 1751 Query 1038 CATTTACACTGTCCCAAATCATGAT-GTAAATTCA--GT--G-T-GGGATTCCGAGGCAT 1090 |||||||||||||||||| ||| || ||||| ||| || | | ||||||| || |||| Sbjct 1752 CATTTACACTGTCCCAAAGCAT-ATTGTAAACTCACAGTCAGCTTGGGATTCAGACGCAT 1810 Query 1091 ATGAGCGCCTAGATTCTACAATGAGGCTATACGGTGCACTTGTCCAGACTGATATTCGTG 1150 |||| ||||||||||||| ||||||||| |||||||||||||| ||||| ||||| || | Sbjct 1811 ATGAACGCCTAGATTCTATAATGAGGCTCTACGGTGCACTTGTTCAGACCGATATCCGCG 1870 Query 1151 GTGGTAATGCTACCAACATTCATGGGATAGAACATGGATGGGCTTGGTTAGCTCGGTTCT 1210 ||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 1871 TTGGCAATGCTACTAACGTTCATGGGATAGAACATGGATGGGCTTGGTTAGCCCGGTTCC 1930 Query 1211 TTAACAACATCTCAGCCATCAACATAGCTACCGTGACAGCGTTAAACGCCTTTCTCCAAA 1270 ||||||| ||| |||||| | || ||| || | |||||| || ||| |||||||||| | Sbjct 1931 TTAACAAAATCCCAGCCA--A-CAGAGCCACTGCGACAGCCTTGAACTCCTTTCTCCAGA 1987 Query 1271 CGGCAGGGTTTGGTCTTCATCA-ACGGTACAAATCTCAGTTTGTGAAAGTTATGAACGTT 1329 |||| ||||||||||||||||| | ||||||||||||||||| |||| ||| |||| ||| Sbjct 1988 CGGCTGGGTTTGGTCTTCATCAGA-GGTACAAATCTCAGTTTCTGAAGGTTGTGAATGTT 2046 Query 1330 G 1330 | Sbjct 2047 G 2047 Score = 385 bits (208), Expect = 8e-106 Identities = 292/332 (88%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 328 AACGACCACCAAACC-AAAACTAAGGAAGATATTAAGAATCAAGTATCAGTTGTTGAAA- 385 ||||||||||||||| ||| | ||||| || |||| ||||||||||||||||||||||| Sbjct 850 AACGACCACCAAACCGAAATC-AAGGACGACATTAGGAATCAAGTATCAGTTGTTGAAAC 908 Query 386 AGGAAATAATGAATGAGATTGAAACGTCTCGCTCTGCTTTAGCTCGGGTTGAGAAGTACC 445 | |||||||||||||||||||||||||||| |||||| |||| |||||||| |||||| Sbjct 909 A-GAAATAATGAATGAGATTGAAACGTCTCTCTCTGCCATAGCCCGGGTTGAAAAGTACA 967 Query 446 GCGAAAATCGTAGAGAAGTTGAACGGAGACTTGATCTTCAATATAAGCGAAAAGTTGCTG 505 | || | ||| | |||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 968 GTGAGACTCGGAAAGAAGTTGAACGGAAACTTGATCTTCAATATCAGCGAAAAGTTGCTG 1027 Query 506 AAGCACTTGATACGCATATGAGTGCAGTCCAACGAGAACATGAGATTAAATCACAAATAG 565 ||||||||||||| ||| ||| |||||||||||| |||||| | |||||||| ||||||| Sbjct 1028 AAGCACTTGATACCCATCTGACTGCAGTCCAACGCGAACATAAAATTAAATCGCAAATAG 1087 Query 566 AAGAAAGAATA-ATAAGGAGTGAAGAGGCTCAGGAGgaagccaagaag-agagaaagggc 623 ||||||||| | |||||||| || || ||||||||||| |||| || | || |||||||| Sbjct 1088 AAGAAAGAA-AGATAAGGAGCGAGGAAGCTCAGGAGGAGGCCAGGAGGAAG-GAAAGGGC 1145 Query 624 aaatcaagaagagaaaatacgtcaagaaaaag 655 |||||||||||||||||||||||||||||| Sbjct 1146 TCATCAAGAAGAGAAAATACGTCAAGAAAAAG 1177 > AT4G05523.1 | Symbols: | BEST Arabidopsis thaliana protein match is: TAIR:AT1G13120.1; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:2808054-2809025 REVERSE LENGTH=666 Length=666 Score = 486 bits (263), Expect = 2e-136 Identities = 493/594 (83%), Gaps = 55/594 (9%) Strand=Plus/Plus Query 11 TTGTTTCGGAACCTCATTGTCCCAAAAGCGTCCAAGGGTTTAGCTATGACCCTGAGCCTA 70 |||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 8 TTGTTTCGGAACATGATTGTCCCAAAAGCGTCGAAGGGTTTAGCTATGACCCTGAACCTA 67 Query 71 ACAGGAGTTTCGATCGCTTGGTCTGTGAGACCGAGTCATTCG--CA-AAG---AA-GC-- 121 |||||||||||||||||||||||| |||||||||||| || | | ||| || || Sbjct 68 ACAGGAGTTTCGATCGCTTGGTCTCTGAGACCGAGTCTTTTGAAAAGAAGCTCAATGCTT 127 Query 122 -T-C-AA--TGC-T------TT-A--AAG---ACGGCAAGGA-GTGATAGAGGATTCGTA 162 | | || | | | || | ||| || |||||| | |||| || ||||||| Sbjct 128 TTACAAAGTTTCATCAACCATTCACTAAGACAACCTCAAGGACG-GATATAGCATTCGTA 186 Query 163 GTGCGTGTATCAGAAGATGATATGGATAGTGATGATGATGTAGAG---AGTGCTCAAGAA 219 |||||||||||||||||||||||||||||||||| ||||||||| | || |||| || Sbjct 187 ATGCGTGTATCAGAAGATGATATGGATAGTGATGAAGATGTAGAGAATAATGATCAACAA 246 Query 220 GA-AGAAGAAGATTATAGTCAAATCTGTACCTGTGATGATTTATACTT--GAG-TGATGA 275 || | ||||||| | |||||||||||||||||||||||| ||||||| | | |||||| Sbjct 247 GACA-AAGAAGA--A-AGTCAAATCTGTACCTGTGATGATCTATACTTAAGCGATGATGA 302 Query 276 TGAGTTTGATCATGAGCTTGAGTAT---ATGATGGATAAGAT--GG--A--TTTGGCTGA 326 ||||||||||||||| ||||||||| || ||| |||| || || | ||||||| Sbjct 303 TGAGTTTGATCATGAACTTGAGTATACGATAATGAATAAAATGGGGCCAGCCCTGGCTGA 362 Query 327 GAACGACCACCAAACCAAAA-CTAAGGAAGATATT-AAGAATCAAGTATCAGTTGTTGAA 384 |||||||||||||||||||| | | |||||||||| || ||||||||||||||||||||| Sbjct 363 GAACGACCACCAAACCAAAAGC-ACGGAAGATATTCAA-AATCAAGTATCAGTTGTTGAA 420 Query 385 AAGGAAATAATGAATGAGATTGAAACGTCTCGCTCTGCTTTAGCTCGGGTTGAGAAGTAC 444 |||||||||| |||||||||||||| | | | |||||| |||||| ||||||||||||| Sbjct 421 AAGGAAATAAGGAATGAGATTGAAAGGGCACTCTCTGCAATAGCTCTGGTTGAGAAGTAC 480 Query 445 CGCGAAAATCGTAGAGAAGTTGAACGGAGACTTGATCTTCAATATAAGCGAAAAGTTGCT 504 |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 481 CGCGAAAACCGTAGAGAAGTTGAACGGAGTCTTGATCTTCAATATAAGCGAGAAGTTTCT 540 Query 505 GAAGCACTTGATACGCATATGAGTGCAGTCCAACGAGAACATG-AGATTAAATC 557 ||||||||||| || ||||||| || |||| |||| ||||||| | |||| ||| Sbjct 541 GAAGCACTTGAGACTCATATGAATGTAGTCAAACGTGAACATGCA-ATTATATC 593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71284773900 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5