BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352353
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13120.1 | Symbols: | | chr1:4469181-4473213 REVERSE LENGT... 566 3e-160
AT4G05523.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 486 2e-136
> AT1G13120.1 | Symbols: | | chr1:4469181-4473213 REVERSE LENGTH=2427
Length=2427
Score = 566 bits (306), Expect = 3e-160
Identities = 548/661 (83%), Gaps = 31/661 (5%)
Strand=Plus/Plus
Query 690 TGCTTTGGCATTGGAGAAGCATAGATTGAAGAAGCTTGAAGAGTTAGAAGCAATGAACCA 749
||||||| ||||||||| || |||||||| ||||| ||||| ||||| ||| ||||||
Sbjct 1398 TGCTTTGATATTGGAGAACCACAGATTGAAAAAGCTCGAAGAACTAGAAACAACGAACCA 1457
Query 750 AGAGCTAAAATCACGTTTAAATCAGGACTTTAGGAGTTTTGA-AAGGAGTATTGGAAG-G 807
| ||| || ||||||| |||| | ||||||| |||||||| ||| | ||||||||| |
Sbjct 1458 ATCGCTTAAGTCACGTTCAAATGAAAACTTTAGCAGTTTTGAGAAGCA-TATTGGAAGAG 1516
Query 808 TCGATAAGGCAGATAACTGGGGTAAAAGATACGGTG-GA-TGCGAAAATCAACGAAATCG 865
| ||||||||| |||| |||| ||| |||| ||| | || ||||||||| || || |
Sbjct 1517 T-GATAAGGCAAATAAGTGGGACAAAGGATA--GTGTAAGTGGGAAAATCAATGATATTG 1573
Query 866 TCAAAGTATTTAAAGATCCTCGTTGTCCTTTATCCATCAGTATTGCAGCTTTTGCAAAGA 925
| ||| |||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1574 TGAAAATATTTAAAGACCCTCGTTGTCCGGTATCCATAAGTATTGCAGCTTTTGCAAAGA 1633
Query 926 GGATGGTCTCCTGT-AGG-----CAAAACCCTTTTGCATGCAGCTACATCATTGGTTATG 979
||||||| || | ||| | ||||||||||||||||||||| |||||| |||
Sbjct 1634 AGATGGTCACCACTAAGGAAAAACCAAACCCTTTTGCATGCAGCTATGTCATTGTTTACA 1693
Query 980 TC-ACTTCGA-AGTTTCCACAAGCTATGGATATTCTTCTTGCTGAATTCCACAAAGCTTG 1037
|| || || | ||||||| |||| ||||||||||||||| || |||||||||||||||||
Sbjct 1694 TCAAC-TC-ACAGTTTCCCCAAGTTATGGATATTCTTCTCGCGGAATTCCACAAAGCTTG 1751
Query 1038 CATTTACACTGTCCCAAATCATGAT-GTAAATTCA--GT--G-T-GGGATTCCGAGGCAT 1090
|||||||||||||||||| ||| || ||||| ||| || | | ||||||| || ||||
Sbjct 1752 CATTTACACTGTCCCAAAGCAT-ATTGTAAACTCACAGTCAGCTTGGGATTCAGACGCAT 1810
Query 1091 ATGAGCGCCTAGATTCTACAATGAGGCTATACGGTGCACTTGTCCAGACTGATATTCGTG 1150
|||| ||||||||||||| ||||||||| |||||||||||||| ||||| ||||| || |
Sbjct 1811 ATGAACGCCTAGATTCTATAATGAGGCTCTACGGTGCACTTGTTCAGACCGATATCCGCG 1870
Query 1151 GTGGTAATGCTACCAACATTCATGGGATAGAACATGGATGGGCTTGGTTAGCTCGGTTCT 1210
||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1871 TTGGCAATGCTACTAACGTTCATGGGATAGAACATGGATGGGCTTGGTTAGCCCGGTTCC 1930
Query 1211 TTAACAACATCTCAGCCATCAACATAGCTACCGTGACAGCGTTAAACGCCTTTCTCCAAA 1270
||||||| ||| |||||| | || ||| || | |||||| || ||| |||||||||| |
Sbjct 1931 TTAACAAAATCCCAGCCA--A-CAGAGCCACTGCGACAGCCTTGAACTCCTTTCTCCAGA 1987
Query 1271 CGGCAGGGTTTGGTCTTCATCA-ACGGTACAAATCTCAGTTTGTGAAAGTTATGAACGTT 1329
|||| ||||||||||||||||| | ||||||||||||||||| |||| ||| |||| |||
Sbjct 1988 CGGCTGGGTTTGGTCTTCATCAGA-GGTACAAATCTCAGTTTCTGAAGGTTGTGAATGTT 2046
Query 1330 G 1330
|
Sbjct 2047 G 2047
Score = 385 bits (208), Expect = 8e-106
Identities = 292/332 (88%), Gaps = 8/332 (2%)
Strand=Plus/Plus
Query 328 AACGACCACCAAACC-AAAACTAAGGAAGATATTAAGAATCAAGTATCAGTTGTTGAAA- 385
||||||||||||||| ||| | ||||| || |||| |||||||||||||||||||||||
Sbjct 850 AACGACCACCAAACCGAAATC-AAGGACGACATTAGGAATCAAGTATCAGTTGTTGAAAC 908
Query 386 AGGAAATAATGAATGAGATTGAAACGTCTCGCTCTGCTTTAGCTCGGGTTGAGAAGTACC 445
| |||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||
Sbjct 909 A-GAAATAATGAATGAGATTGAAACGTCTCTCTCTGCCATAGCCCGGGTTGAAAAGTACA 967
Query 446 GCGAAAATCGTAGAGAAGTTGAACGGAGACTTGATCTTCAATATAAGCGAAAAGTTGCTG 505
| || | ||| | |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 968 GTGAGACTCGGAAAGAAGTTGAACGGAAACTTGATCTTCAATATCAGCGAAAAGTTGCTG 1027
Query 506 AAGCACTTGATACGCATATGAGTGCAGTCCAACGAGAACATGAGATTAAATCACAAATAG 565
||||||||||||| ||| ||| |||||||||||| |||||| | |||||||| |||||||
Sbjct 1028 AAGCACTTGATACCCATCTGACTGCAGTCCAACGCGAACATAAAATTAAATCGCAAATAG 1087
Query 566 AAGAAAGAATA-ATAAGGAGTGAAGAGGCTCAGGAGgaagccaagaag-agagaaagggc 623
||||||||| | |||||||| || || ||||||||||| |||| || | || ||||||||
Sbjct 1088 AAGAAAGAA-AGATAAGGAGCGAGGAAGCTCAGGAGGAGGCCAGGAGGAAG-GAAAGGGC 1145
Query 624 aaatcaagaagagaaaatacgtcaagaaaaag 655
||||||||||||||||||||||||||||||
Sbjct 1146 TCATCAAGAAGAGAAAATACGTCAAGAAAAAG 1177
> AT4G05523.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: TAIR:AT1G13120.1; Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:2808054-2809025
REVERSE LENGTH=666
Length=666
Score = 486 bits (263), Expect = 2e-136
Identities = 493/594 (83%), Gaps = 55/594 (9%)
Strand=Plus/Plus
Query 11 TTGTTTCGGAACCTCATTGTCCCAAAAGCGTCCAAGGGTTTAGCTATGACCCTGAGCCTA 70
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 8 TTGTTTCGGAACATGATTGTCCCAAAAGCGTCGAAGGGTTTAGCTATGACCCTGAACCTA 67
Query 71 ACAGGAGTTTCGATCGCTTGGTCTGTGAGACCGAGTCATTCG--CA-AAG---AA-GC-- 121
|||||||||||||||||||||||| |||||||||||| || | | ||| || ||
Sbjct 68 ACAGGAGTTTCGATCGCTTGGTCTCTGAGACCGAGTCTTTTGAAAAGAAGCTCAATGCTT 127
Query 122 -T-C-AA--TGC-T------TT-A--AAG---ACGGCAAGGA-GTGATAGAGGATTCGTA 162
| | || | | | || | ||| || |||||| | |||| || |||||||
Sbjct 128 TTACAAAGTTTCATCAACCATTCACTAAGACAACCTCAAGGACG-GATATAGCATTCGTA 186
Query 163 GTGCGTGTATCAGAAGATGATATGGATAGTGATGATGATGTAGAG---AGTGCTCAAGAA 219
|||||||||||||||||||||||||||||||||| ||||||||| | || |||| ||
Sbjct 187 ATGCGTGTATCAGAAGATGATATGGATAGTGATGAAGATGTAGAGAATAATGATCAACAA 246
Query 220 GA-AGAAGAAGATTATAGTCAAATCTGTACCTGTGATGATTTATACTT--GAG-TGATGA 275
|| | ||||||| | |||||||||||||||||||||||| ||||||| | | ||||||
Sbjct 247 GACA-AAGAAGA--A-AGTCAAATCTGTACCTGTGATGATCTATACTTAAGCGATGATGA 302
Query 276 TGAGTTTGATCATGAGCTTGAGTAT---ATGATGGATAAGAT--GG--A--TTTGGCTGA 326
||||||||||||||| ||||||||| || ||| |||| || || | |||||||
Sbjct 303 TGAGTTTGATCATGAACTTGAGTATACGATAATGAATAAAATGGGGCCAGCCCTGGCTGA 362
Query 327 GAACGACCACCAAACCAAAA-CTAAGGAAGATATT-AAGAATCAAGTATCAGTTGTTGAA 384
|||||||||||||||||||| | | |||||||||| || |||||||||||||||||||||
Sbjct 363 GAACGACCACCAAACCAAAAGC-ACGGAAGATATTCAA-AATCAAGTATCAGTTGTTGAA 420
Query 385 AAGGAAATAATGAATGAGATTGAAACGTCTCGCTCTGCTTTAGCTCGGGTTGAGAAGTAC 444
|||||||||| |||||||||||||| | | | |||||| |||||| |||||||||||||
Sbjct 421 AAGGAAATAAGGAATGAGATTGAAAGGGCACTCTCTGCAATAGCTCTGGTTGAGAAGTAC 480
Query 445 CGCGAAAATCGTAGAGAAGTTGAACGGAGACTTGATCTTCAATATAAGCGAAAAGTTGCT 504
|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 481 CGCGAAAACCGTAGAGAAGTTGAACGGAGTCTTGATCTTCAATATAAGCGAGAAGTTTCT 540
Query 505 GAAGCACTTGATACGCATATGAGTGCAGTCCAACGAGAACATG-AGATTAAATC 557
||||||||||| || ||||||| || |||| |||| ||||||| | |||| |||
Sbjct 541 GAAGCACTTGAGACTCATATGAATGTAGTCAAACGTGAACATGCA-ATTATATC 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5