BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352355
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22770.1 | Symbols: alpha-ADR | alpha-adaptin | chr5:7579544... 835 0.0
AT5G22780.1 | Symbols: | Adaptor protein complex AP-2, alpha s... 830 0.0
> AT5G22770.1 | Symbols: alpha-ADR | alpha-adaptin | chr5:7579544-7588246
REVERSE LENGTH=3559
Length=3559
Score = 835 bits (452), Expect = 0.0
Identities = 541/579 (93%), Gaps = 26/579 (4%)
Strand=Plus/Plus
Query 158 GGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGGCGTCTTCTA 217
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 765 GGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTA 824
Query 218 CGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCGTACTCAAGTTGTCTACCTA 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCGTACTCAAGTTGTCTACCTA 884
Query 278 AATATGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACAT 337
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 885 AATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAAGATGTTCCTCAGGAGTACACAT 944
Query 338 ACTCTGGCATCCCATCTCCTTGGCTCCAGGTTAAGGCAATGAGGGCTCTTCAATATTTTC 397
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 945 ACTATGGCATCCCATCTCCTTGGCTCCAGGTTAAGGCAATGAGGGCTCTTCAATATTTCC 1004
Query 398 CAACCATTGAAG-----A-T--C-------C-C------A-GTCCTTCAGC-AATATTGA 433
| |||||||||| | | | | | | |||||||||| ||||||||
Sbjct 1005 CGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGGTCCTTCAGCGAATATTGA 1064
Query 434 TGGGGACAGATGTTGTGAAAAATGTGAATAAAAACAATGCGTCTCATGTTGTGCTGTTTG 493
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1065 TGGGGACAGATGTTGTGAAAAATGTGAATAAAAACAATGCGTCTCATGCTGTGCTGTTTG 1124
Query 494 AAGCTCTATCCCTGGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTG 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AAGCTCTATCCCTGGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTG 1184
Query 554 CTTTTCTTGGCAAATTTATTTCGGTCCGTGAGCCCAACATCAGATATCTAGGCTTGGAAA 613
|| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1185 CTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGGAAA 1244
Query 614 ATATGACACGAATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTC 673
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 ATATGACGCGGATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTC 1304
Query 674 AGATAATCACCTCCTT-AAAGACCCTGACATCAG-ATTC 710
|||||||||||||||| ||||||||||||||||| ||||
Sbjct 1305 AGATAATCACCTCCTTGAAAGACCCTGACATCAGTATTC 1343
Score = 527 bits (285), Expect = 1e-148
Identities = 319/336 (95%), Gaps = 0/336 (0%)
Strand=Plus/Plus
Query 1257 AGGGGCTGCCTTTATGGATGTATTGGCTGAGATGCCAAAATTTCCCGAGCGCCAGTCTTC 1316
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1960 AGGGCCTGCCTTTATGGATGTATTGGCTGAGATGCCAAAATTTCCGGAGCGCCAGTCTTC 2019
Query 1317 ATTGATAAAAAAGGCAGAATATGTTGAAGATACCGCAGACCAGAGTGCCATCAAGCTTAG 1376
|||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 2020 ATTGATTAAAAAGGCAGAAAACGTTGAAGATACCGCAGACCAGAGTGCCATCAAACTTAG 2079
Query 1377 AGCACAACAACAGCCTTCAAATGCTTTTGTTTTGGCTGACCCACAGCCTGTTAATGGGGC 1436
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 2080 AGCACAACAACAGCCTTCAAATGCTATGGTTTTGGCTGACCAACAGCCTGTTAATGGGGC 2139
Query 1437 ACCACCACCTTTGAAGGTTCCAATTTTAAGTGGAAGCACGGACCCCGAGTCAGTGGCTCG 1496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2140 ACCACCACCTTTGAAGGTTCCAATTTTAAGTGGAAGCACGGACCCTGAGTCAGTGGCTCG 2199
Query 1497 ATCTGTCTCACATCCCAATGGACCTTTAAGTAATATAGATCCACAAACTCCATCACCTGA 1556
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2200 ATCTCTCTCACATCCCAATGGAACTTTAAGTAATATAGATCCACAAACTCCATCACCTGA 2259
Query 1557 TCTGCTAAGTGACCTGCTCGTTCCTCTTGCGATAGA 1592
||| || |||||||| |||| ||||||||| |||||
Sbjct 2260 TCTCCTTAGTGACCTACTCGGTCCTCTTGCAATAGA 2295
Score = 429 bits (232), Expect = 4e-119
Identities = 264/280 (94%), Gaps = 0/280 (0%)
Strand=Plus/Plus
Query 732 CAGTATTCGTAGACGTGATCTTGATTTGCTATATGGGATGTGCGATGTGTCAAATGCAAA 791
|||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1336 CAGTATTCGTAGGCGTGCTCTTGATTTATTATATGGGATGTGTGATGTGTCAAATGCAAA 1395
Query 792 GGATATAGTCGAAGAGTTGTTGCAGTATCTTAGCACAATGGAGTTTTCTATGCAGGAGGA 851
||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||| ||
Sbjct 1396 GGATATAGTCGAAGAGTTGCTGCAGTATCTTAGCACAGCAGAGTTTTCCATGCGGGAAGA 1455
Query 852 ATTATCACTTAAAGCTGCTATCCTTGCTGAGAAGTTTGCTCCTGATCTATCATGGTATGT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ATTATCACTTAAAGCTGCTATCCTTGCTGAGAAGTTTGCTCCTGATCTATCATGGTATGT 1515
Query 912 CGATGTGATCCTTCAGTTGATCGACAAGGCTGGGGATTTTGTTAGCGACGACATTTGGTT 971
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1516 TGATGTGATCCTTCAGTTGATCGACAAGGCTGGGGATTTTGTTAGCGATGACATATGGTT 1575
Query 972 TCGTGTGGTTCAGTTTGTAACAAATAATGAAGACCTCCAG 1011
|||||||||||||||||||||||||||||||||||| |||
Sbjct 1576 TCGTGTGGTTCAGTTTGTAACAAATAATGAAGACCTGCAG 1615
Score = 392 bits (212), Expect = 6e-108
Identities = 239/252 (95%), Gaps = 1/252 (0%)
Strand=Plus/Plus
Query 1010 AGGTCAGTGCTTATATTTTGGGGGAGTATGGTCACCTTCTTTCTCGACAACCTGGATGCA 1069
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1680 AGGTCAGTGCTTATATTTTGGGGGAGTATGGTCACCTTCTAGCTAGACAACCTGGATGCA 1739
Query 1070 GTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCCACAGTATCGACTCCCACCA 1129
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1740 GTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCTACAATATCGACTCCCACCA 1799
Query 1130 TTCCTATACTTCTTTCCACATATGCAACGCTTCTTATGCACACTCAACCCCCGGATCCAG 1189
||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1800 TTCCTATTCTTCTTTCCACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAG 1859
Query 1190 AACTGCAAAATAAAGTT-GGGCTGTATTTCAGAAGTATGAGAGTTGTATTGATGTGGAGA 1248
|||||||||| |||||| ||||||||||| |||| |||||||||||||| ||||||||||
Sbjct 1860 AACTGCAAAAAAAAGTTTGGGCTGTATTTAAGAAATATGAGAGTTGTATCGATGTGGAGA 1919
Query 1249 TACAACAGAGGG 1260
||||||||||||
Sbjct 1920 TACAACAGAGGG 1931
Score = 156 bits (84), Expect = 8e-37
Identities = 90/93 (97%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1591 GAACAACATGGTCCCATAGGGGTAGAAGGAGTTCCAGATGAAGTTGATGGTTCCGCCATT 1650
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2321 GAACAACATGGTCCCGTAGGGGCAGAAGGAGTTCCAGATGAAGTTGATGGTTCCGCCATT 2380
Query 1651 GTACCTGTTGAAGAGCAAACAAATACAGTGGAG 1683
|||||||||||||||||||| ||||||||||||
Sbjct 2381 GTACCTGTTGAAGAGCAAACCAATACAGTGGAG 2413
> AT5G22780.1 | Symbols: | Adaptor protein complex AP-2, alpha
subunit | chr5:7589854-7598049 REVERSE LENGTH=3509
Length=3509
Score = 830 bits (449), Expect = 0.0
Identities = 540/579 (93%), Gaps = 26/579 (4%)
Strand=Plus/Plus
Query 158 GGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGGCGTCTTCTA 217
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 766 GGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTA 825
Query 218 CGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCGTACTCAAGTTGTCTACCTA 277
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 826 CGAGTCTTCTTGTAGCTCTGGTATCTAACAATCATGAGGCGTACTCAAGTTGTCTACCTA 885
Query 278 AATATGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACAT 337
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACAT 945
Query 338 ACTCTGGCATCCCATCTCCTTGGCTCCAGGTTAAGGCAATGAGGGCTCTTCAATATTTTC 397
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ACTATGGCATCCCATCTCCTTGGCTCCAGGTTAAGGCAATGAGGGCTCTTCAATATTTTC 1005
Query 398 CAACCATTGAAG-----A-T----------C-C-C----A-GTCCTTCAGC-AATATTGA 433
|||||||||||| | | | | | | |||||||||| ||||||||
Sbjct 1006 CAACCATTGAAGATCCCAGTACCAGAAAAGCTCTCTTTGAGGTCCTTCAGCGAATATTGA 1065
Query 434 TGGGGACAGATGTTGTGAAAAATGTGAATAAAAACAATGCGTCTCATGTTGTGCTGTTTG 493
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1066 TGGGCACAGATGTTGTGAAAAATGTGAATAAAAACAATGCGTCTCATGCCGTGCTGTTTG 1125
Query 494 AAGCTCTATCCCTGGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTG 553
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 AAGCTCTCTCCCTGGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTG 1185
Query 554 CTTTTCTTGGCAAATTTATTTCGGTCCGTGAGCCCAACATCAGATATCTAGGCTTGGAAA 613
|| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1186 CTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGGAAA 1245
Query 614 ATATGACACGAATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTC 673
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 ATATGACGCGAATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTC 1305
Query 674 AGATAATCACCTCCTT-AAAGACCCTGACATCAG-ATTC 710
||||||||||||| || ||||||||||||||||| ||||
Sbjct 1306 AGATAATCACCTCGTTGAAAGACCCTGACATCAGTATTC 1344
Score = 575 bits (311), Expect = 5e-163
Identities = 411/454 (91%), Gaps = 27/454 (6%)
Strand=Plus/Plus
Query 1257 AGGGGCTGCCTTTATGGATGTATTGGCTGAGATGCCAAAATTTCCCGAGCGCCAGTCTTC 1316
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1961 AGGGCCTGCCTTTATGGATGTATTGGCTGAGATGCCAAAATTTCCGGAGCGCCAGTCTTC 2020
Query 1317 ATTGATAAAAAAGGCAGAATATGTTGAAGATACCGCAGACCAGAGTGCCATCAAGCTTAG 1376
|||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 2021 ATTGATTAAAAAGGCAGAAAACGTTGAAGATACCGCAGACCAGAGTGCCATCAAACTTAG 2080
Query 1377 AGCACAACAACAGCCTTCAAATGCTTTTGTTTTGGCTGACCCACAGCCTGTTAATGGGGC 1436
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2081 AGCACAACAACAGCCTTCAAATGCTATTGTTTTGGCTGACCCACAGCCTGTTAATGGGGC 2140
Query 1437 ACCACCACCTTTGAAGGTTCCAATTTTAAGTGGAAGCACGGACCCCGAGTCAGTGGCTCG 1496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2141 ACCACCACCTTTGAAGGTTCCAATTTTAAGTGGAAGCACGGACCCTGAGTCAGTGGCTCG 2200
Query 1497 ATCTGTCTCACATCCCAATGGACCTTTAAGTAATATAGATCCACAAACTCCATCACCTGA 1556
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2201 ATCTCTCTCACATCCCAATGGAACTTTAAGTAATATAGATCCACAAACTCCATCACCTGA 2260
Query 1557 TCTGCTAAGTGACCTGCTC-GT--TC---C--T-----CT-----T---GC-G----ATA 1590
||| || |||||||| ||| || || | | || | || | |||
Sbjct 2261 TCTCCTTAGTGACCTACTCGGTCCTCTTGCAATAGAGGCTCCACCTGGAGCTGTCTCATA 2320
Query 1591 -GAACAACATGGTCCCATAGGGGTAGAAGGAGTTCCAGATGAAGTTGATGGTTCCGCCAT 1649
||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2321 TGAACAACATGGTCCCGTAGGGGCAGAAGGAGTTCCAGATGAAATTGATGGTTCCGCCAT 2380
Query 1650 TGTACCTGTTGAAGAGCAAACAAATACAGTGGAG 1683
||||||||||||||||||||||||||||||||||
Sbjct 2381 TGTACCTGTTGAAGAGCAAACAAATACAGTGGAG 2414
Score = 446 bits (241), Expect = 4e-124
Identities = 267/280 (95%), Gaps = 0/280 (0%)
Strand=Plus/Plus
Query 732 CAGTATTCGTAGACGTGATCTTGATTTGCTATATGGGATGTGCGATGTGTCAAATGCAAA 791
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 CAGTATTCGTAGACGCGCTCTTGATTTGCTATATGGGATGTGCGATGTGTCAAATGCAAA 1396
Query 792 GGATATAGTCGAAGAGTTGTTGCAGTATCTTAGCACAATGGAGTTTTCTATGCAGGAGGA 851
||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 1397 GGATATAGTTGAAGAGTTGTTGCAGTATCTTAGCACAGCAGAATTTTCTATGCGGGAGGA 1456
Query 852 ATTATCACTTAAAGCTGCTATCCTTGCTGAGAAGTTTGCTCCTGATCTATCATGGTATGT 911
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1457 ATTATCACTTAAAGCTGCTATTCTTGCTGAGAAGTTTGCTCCTGATCTTTCATGGTATGT 1516
Query 912 CGATGTGATCCTTCAGTTGATCGACAAGGCTGGGGATTTTGTTAGCGACGACATTTGGTT 971
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1517 AGATGTGATCCTTCAGTTGATCGACAAGGCTGGGGATTTTGTTAGCGATGACATTTGGTT 1576
Query 972 TCGTGTGGTTCAGTTTGTAACAAATAATGAAGACCTCCAG 1011
|||||||||||||||||||||||||||||||||||| |||
Sbjct 1577 TCGTGTGGTTCAGTTTGTAACAAATAATGAAGACCTGCAG 1616
Score = 387 bits (209), Expect = 3e-106
Identities = 239/253 (94%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 1010 AGGTCAGTGCTTATATTTTGGGGGAGTATGGTCACCTTCTT-TCTCGACAACCTGGATGC 1068
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1681 AGGTCAGTGCTTATATTTTGGGGGAGTATGGTCACCTT-TTAGCTAGACAACCTGGATGC 1739
Query 1069 AGTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCCACAGTATCGACTCCCACC 1128
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1740 AGTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCTACAGTATCGACTCCCACC 1799
Query 1129 ATTCCTATACTTCTTTCCACATATGCAACGCTTCTTATGCACACTCAACCCCCGGATCCA 1188
|||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1800 ATTCCTATTCTTCTTTCTACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCA 1859
Query 1189 GAACTGCAAAATAAAGTT-GGGCTGTATTTCAGAAGTATGAGAGTTGTATTGATGTGGAG 1247
||||||||||| |||||| ||||||||||| |||| |||||||||||||| |||||||||
Sbjct 1860 GAACTGCAAAAAAAAGTTTGGGCTGTATTTAAGAAATATGAGAGTTGTATCGATGTGGAG 1919
Query 1248 ATACAACAGAGGG 1260
|||||||||||||
Sbjct 1920 ATACAACAGAGGG 1932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5