BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352378

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04580.1 | Symbols:  | Homeodomain-like superfamily protein ...   438    2e-122


> AT4G04580.1 | Symbols:  | Homeodomain-like superfamily protein 
| chr4:2293761-2294906 REVERSE LENGTH=501
Length=501

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 429/516 (83%), Gaps = 36/516 (7%)
 Strand=Plus/Plus

Query  10   CCGATCGTTAGATCTTACATTAGGTCA-A-AAGTGCCGCCTATGCGTTGGACAGACGATC  67
            ||||| ||||||||||||||||||||| | || | ||||  ||||  ||||| |||||||
Sbjct  10   CCGATGGTTAGATCTTACATTAGGTCAGACAA-T-CCGCGAATGCACTGGACCGACGATC  67

Query  68   TTGACCTCCTTTTTACTCAAGTTGTTGAATTACTTGGTGGCGAAAGGA-AG-GCAACTCC  125
            ||||  ||| ||||| ||||||| |||||  ||| ||||||| || || || ||||||||
Sbjct  68   TTGATATCCGTTTTATTCAAGTTATTGAAAAACTCGGTGGCG-AA-GAGAGTGCAACTCC  125

Query  126  TAAGCCAATTTTGA-ACTGTATGGATGTGAGAAACCTCACAATATCACATGTGAAAAGCC  184
            ||||  ||||||||  || ||||| ||||||| ||||||||||||||||||| ||||| |
Sbjct  126  TAAGAGAATTTTGAGTCT-TATGGGTGTGAGAGACCTCACAATATCACATGTCAAAAGTC  184

Query  185  ATCTCCAGATGTATa-gaaaaaagaagaaagaagaattta-taaaagaaaggagaatgat  242
            ||||||||||||||| ||| ||| ||||||||||||| || | |||||||  | ||||||
Sbjct  185  ATCTCCAGATGTATAGGAACAAA-AAGAAAGAAGAATCTAGT-AAAGAAATAAAAATGAT  242

Query  243  gcgagaaatgaaC-CAGAGGCAATCTCGA-CAATACCTTCAGATCTACGAACGTGCTCGA  300
            ||| || ||| || ||||||||||||| | ||||| ||||| ||||| |||      |  
Sbjct  243  GCGGGAGATG-ACACAGAGGCAATCTC-AGCAATATCTTCAAATCTATGAA------C--  292

Query  301  GATGCTACCCAATTTATGCAGAATCAACAAAGACCACAATTGGATATTATTGAGAAGATA  360
            | ||||||||||||||| || ||||||||||| | |||| |||||| || ||||||||||
Sbjct  293  G-TGCTACCCAATTTATCCAAAATCAACAAAGGCTACAACTGGATAATACTGAGAAGATA  351

Query  361  ACCCCAGTTTTGGGATCAAGTAACAAGTTTCTCTATCAAT-TTGCAAGAGAGA-G-ACTT  417
            |||||||||||||||||||||||||||| |||  |||||| || ||| || |  | ||| 
Sbjct  352  ACCCCAGTTTTGGGATCAAGTAACAAGTCTCTAGATCAATCTT-CAA-AG-GTTGGACTA  408

Query  418  AATGAAAACAGAAACAATGATGTCGTTGTTGCTGGTGGTAGTGCAATTGGTGAAGAAGAA  477
            ||||||||||||  ||||||||| ||||||| ||||||| |  ||| |||||||||||||
Sbjct  409  AATGAAAACAGAGGCAATGATGTTGTTGTTGTTGGTGGT-G--CAACTGGTGAAGAAGAA  465

Query  478  TTATCTCTTGAACTCACTCTTGGTCACAAGTACTAA  513
            || || ||||||||||||||||||| ||||||||||
Sbjct  466  TTGTCCCTTGAACTCACTCTTGGTCGCAAGTACTAA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5