BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352380

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04580.1 | Symbols:  | Homeodomain-like superfamily protein ...   545    1e-154


> AT4G04580.1 | Symbols:  | Homeodomain-like superfamily protein 
| chr4:2293761-2294906 REVERSE LENGTH=501
Length=501

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 441/510 (86%), Gaps = 15/510 (3%)
 Strand=Plus/Plus

Query  1    ATGCGAGATCTGATCGTTAGATCTTACATTAGGCCAAAAC-TTCCGAGTATGCGTTGGAC  59
            |||| ||||| ||| |||||||||||||||||| | | ||  |||| | ||||  |||||
Sbjct  1    ATGCAAGATCCGATGGTTAGATCTTACATTAGGTC-AGACAATCCGCGAATGCACTGGAC  59

Query  60   CGACGATCTCGACATCCGTTTTGTTCAAGTTGTTGAATTCCTCGGTGGCGAAAG-GAGTG  118
            ||||||||| || ||||||||| |||||||| |||||   |||||||||| ||| |||||
Sbjct  60   CGACGATCTTGATATCCGTTTTATTCAAGTTATTGAAAAACTCGGTGGCG-AAGAGAGTG  118

Query  119  CAACTCCTAAGAAAATTTTGAGTCACATGGGTGTGAGAGACCTCACAATATCACATGTGA  178
            |||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| |
Sbjct  119  CAACTCCTAAGAGAATTTTGAGTCTTATGGGTGTGAGAGACCTCACAATATCACATGTCA  178

Query  179  AAAGCCATCTCCAGATGTATAGGAA-AAAGAAGGAAGCAGAATCTATTAAAGCAAGGAGA  237
            |||| |||||||||||||||||||| ||| ||| ||| |||||||| ||||| ||  | |
Sbjct  179  AAAGTCATCTCCAGATGTATAGGAACAAA-AAGAAAGAAGAATCTAGTAAAGAAATAAAA  237

Query  238  ATGATACATGAAATGA-AGCGGAGGCAATCTCAACAATACCTTCAAATCTATGAACGTGC  296
            ||||| |  || |||| | | |||||||||||| ||||| ||||||||||||||||||||
Sbjct  238  ATGATGCGGGAGATGACA-CAGAGGCAATCTCAGCAATATCTTCAAATCTATGAACGTGC  296

Query  297  TACCCAATTTATCCAAAATCATCAAAGGCTACAGTTGGATAATACTGAGAAGATAACATC  356
            ||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||  |
Sbjct  297  TACCCAATTTATCCAAAATCAACAAAGGCTACAACTGGATAATACTGAGAAGATAACCCC  356

Query  357  A-TCTTTGGGATCGAGTAACAAGTCTCTCTATCAATCTTCAAGAG-TGGGATTCAATGAA  414
            | | ||||||||| ||||||||||||||  |||||||||||| || | ||| | ||||||
Sbjct  357  AGT-TTTGGGATCAAGTAACAAGTCTCTAGATCAATCTTCAA-AGGTTGGACTAAATGAA  414

Query  415  AACAGAGACAATGATGTCGTTGTCGCTGGTGGTGGTGTAATTGGTGAAGAAGGATTGTCC  474
            ||||||| ||||||||| ||||| | |  |||||||| || ||||||||||| |||||||
Sbjct  415  AACAGAGGCAATGATGTTGTTGTTG-T--TGGTGGTGCAACTGGTGAAGAAGAATTGTCC  471

Query  475  CTTGAACTCACTCTTGGTCACAAGTACTAA  504
            ||||||||||||||||||| ||||||||||
Sbjct  472  CTTGAACTCACTCTTGGTCGCAAGTACTAA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5