BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352381

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04580.1 | Symbols:  | Homeodomain-like superfamily protein ...   141    5e-33


> AT4G04580.1 | Symbols:  | Homeodomain-like superfamily protein 
| chr4:2293761-2294906 REVERSE LENGTH=501
Length=501

 Score =  141 bits (76),  Expect = 5e-33
 Identities = 98/108 (91%), Gaps = 3/108 (3%)
 Strand=Plus/Plus

Query  286  AAGGTGGGACTAAATGAAAACAGAGACAATGATGTTGTTGTGGTTGATGATGTTGCAATT  345
            ||||| ||||||||||||||||||| ||||||||||||||| ||||  | || ||||| |
Sbjct  397  AAGGTTGGACTAAATGAAAACAGAGGCAATGATGTTGTTGTTGTTG--G-TGGTGCAACT  453

Query  346  GGTGAAGAAGGATTGTCCTTTGAACTCACTCTTGGTCGCAAGTACTAA  393
            |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct  454  GGTGAAGAAGAATTGTCCCTTGAACTCACTCTTGGTCGCAAGTACTAA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5