BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352398

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04780.1 | Symbols: MED21 | mediator 21 | chr4:2432309-24335...   660    0.0  


> AT4G04780.1 | Symbols: MED21 | mediator 21 | chr4:2432309-2433550 
FORWARD LENGTH=647
Length=647

 Score =  660 bits (357),  Expect = 0.0
 Identities = 399/420 (95%), Gaps = 0/420 (0%)
 Strand=Plus/Plus

Query  1    ATGGATATAATCTCACAGTTGCAAGAGCAAGTGAATACGATTGCTGCTATCACTTTCAAT  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  75   ATGGATATAATCTCACAGTTGCAAGAACAAGTGAATACGATTGCTGCTATCACTTTCAAT  134

Query  61   GCTTTTGGGACACTCCAAAGGGATGCACCTCCTGTCCAGCTTTCACCTAATTATCCTCAA  120
            |||||||||||||| |||||||||||||| || |||||||||||||||||||||||| ||
Sbjct  135  GCTTTTGGGACACTGCAAAGGGATGCACCACCAGTCCAGCTTTCACCTAATTATCCTGAA  194

Query  121  CCACCCGCTACAACTACGGCTGTTGATGACGCTACGCCTTTTCCTGAGCAACCTAAGCAG  180
            ||||||||||||||||||| |  |||||| ||||||||||||||||||||||||||||||
Sbjct  195  CCACCCGCTACAACTACGGTTACTGATGATGCTACGCCTTTTCCTGAGCAACCTAAGCAG  254

Query  181  CTCAGTGCCGGTTTAGTTAAGGCTGCTAAACAGTTTGATGCTTTGGTTGCAGCTCTTCCT  240
            |||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  255  CTCAGTGCTGGCTTAGTTAAGGCTGCTAAACAGTTTGATGCTTTGGTTGCTGCACTTCCT  314

Query  241  TTGTCAGAAGGAGGTGAAGAAGCTCAGCTCAAAAGAATCGCTCAACTCCAGGTGGAAAAT  300
            ||||||||||| |||||||  ||||||||||||||||||||| |||||||||||||||||
Sbjct  315  TTGTCAGAAGGTGGTGAAGGTGCTCAGCTCAAAAGAATCGCTGAACTCCAGGTGGAAAAT  374

Query  301  GATCTTGTTGGTCAAGAACTCCAAAAGCAACTAGAGGCTGCAGAGAAGGAGCTAAAGCAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  375  GATCTTGTTGGTCAAGAACTCCAAAAGCAACTAGAGGCTGCAGAGAAGGAGCTAAAGCAA  434

Query  361  GTCCAAGAGCTATTTGGACAAGCTGCAGACAGTTGCCTGAACATGAAGAAACCTGAATGA  420
            || |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct  435  GTACAAGAGCTGTTTGGACAAGCTGCTGACAATTGCCTGAACATGAAGAAACCTGAATGA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5