BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352427

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02120.1 | Symbols:  | CTP synthase family protein | chr4:94...   586    9e-167
  AT3G04770.1 | Symbols: RPSAb | 40s ribosomal protein SA B | chr...   211    6e-54 


> AT4G02120.1 | Symbols:  | CTP synthase family protein | chr4:940778-944291 
FORWARD LENGTH=1960
Length=1960

 Score =  586 bits (317),  Expect = 9e-167
 Identities = 345/358 (96%), Gaps = 4/358 (1%)
 Strand=Plus/Plus

Query  36    GACTCCGGAGGCACATGCTGCTGCTTGGAACATCTTCAAGAGCGCAGAATGCATTCTGGT  95
             |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  1139  GACTCCGGAGGCGCATGCTGCTGCTTGGAAGATCTTGAAGAGCGCAGAATGCATTCTGGT  1198

Query  96    TCCTGGTGGTTTTGGAGATCGTGGCGTGAGCGGAATGGTTTTAGCAGCCAAATACGCTAG  155
             |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct  1199  TCCTGGTGGTTTTGGAGATCGTGGTGTGAGTGGAATGGTTTTAGCAGCCAAATACGCTAG  1258

Query  156   AGAGAACAAAATTCCTTATCTTGGGATCTGCTTGGGGATGCAAATTGCAGTAATTGAGTT  215
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1259  AGAGAACAAAATTCCTTATCTTGGGATCTGCTTGGGGATGCAAATTGCAGTAATTGAGTT  1318

Query  216   TGCCAGATCTGTTTTGGGTTTGGAAAGAGCAAATAGCACCGAGTTCGATGCTCAGACATC  275
             ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1319  TGCAAGATCTGTTTTGGGTTTGGAAAGAGCAAATAGCACTGAGTTCGATGCTCAGACATC  1378

Query  276   TGACCCTGTTGTTATTTTTATGCCAGAAGTATGGCTCAAGAACACATATGGGAAGCACAA  335
             ||||||||||||||| |||||||||| |  | ||||||||||||||||||||||||||||
Sbjct  1379  TGACCCTGTTGTTATATTTATGCCAG-A--A-GGCTCAAGAACACATATGGGAAGCACAA  1434

Query  336   TGAGACTTGGATCCCGAAGAACACATTTACAGAACCGAGACTCTCTCACTTCAAAACT  393
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1435  TGAGACTTGGATCCCGAAGAACACATTTACACAACCGAGACTCTCTCACTTCAAAACT  1492


 Score =  141 bits (76),  Expect = 8e-33
 Identities = 80/82 (98%), Gaps = 0/82 (0%)
 Strand=Plus/Plus

Query  394   GTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGTGGGTAAAGAT  453
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1542  GTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGTGGGTAAAGAT  1601

Query  454   GATACAGGGAAACGAGTCGAGG  475
             |||||||||||||| || ||||
Sbjct  1602  GATACAGGGAAACGTGTTGAGG  1623


> AT3G04770.1 | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309294-1310887 
REVERSE LENGTH=1211
Length=1211

 Score =  211 bits (114),  Expect = 6e-54
 Identities = 122/126 (97%), Gaps = 0/126 (0%)
 Strand=Plus/Plus

Query  502  TATGGTCAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGCTAATGCAATTGCTGGA  561
            ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  300  TATGGACAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGA  359

Query  562  AGACATACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTG  621
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  AGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTG  419

Query  622  TTGATT  627
            ||||||
Sbjct  420  TTGATT  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32501493109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5