BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352454
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:2... 1205 0.0
AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:2... 276 3e-73
> AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:2760881-2762445
REVERSE LENGTH=1179
Length=1179
Score = 1205 bits (652), Expect = 0.0
Identities = 837/925 (90%), Gaps = 18/925 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCGTCTTTA-CCTC--CGGCGATGGAGGTCGGAGAATCTAGAAACTGGACG 57
|||||||||||||||| | || | |||||||||||||||||||||||| ||||||||||
Sbjct 46 ATGGCTTCTTCGTCTTCACCCCCGGCGGCGATGGAGGTCGGAGAATCTACAAACTGGACG 105
Query 58 GAGCTTCCACCGGAACTGACGTCATTGATACTGCACCGTCTTGGCGCGATTGAGATACTG 117
|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 106 GAGCTTCCACCGGAACTGACTTCAGCAATCCTGCACCGTCTTGGCGCGATTGAGATACTT 165
Query 118 GAAAACGCTCAGAAAGTTTGCAGATCGTGGCGTCGCGTTTGTAAAGACCCATCGATGTGG 177
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 166 GAAAACGCTCAGAAAGTTTGCAGATCTTGGCGTCGTGTTTGTAAAGACCCATCGATGTGG 225
Query 178 CGTAAAATCGACATGCATAACCTCGGAGATTTGGAAGACATGGAATT-CAACCTCGATAT 236
|||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||| ||
Sbjct 226 CGTAAAATTGACATGCATAACCTCGGAGATTTGGACGACATGG-ATTACAACCTCGAGAT 284
Query 237 CATGTGTCGTCACGCTGTTGATCGTAGCCAGGGAGGCCTGGTTGAGATCGATATATGGTA 296
|||||| |||||||||||||||||||||||||||||| ||||||| |||| ||| |||||
Sbjct 285 CATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTTGATATCGGTATTTGGTA 344
Query 297 -TTTCGGTACTGATGGTCTCCTCAATTACATCGCCGATAGGTCGAGTAATCTGAGAAGCC 355
||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 345 CTTT-GGTACTGTTGATCTCCTCAATTACATCGCCCATAGGTCGAGTAATCTGAGAAGCC 403
Query 356 TTAGACTGACAAGGTGCTCTCAAATTACGGACGATGGACTTGTCGAAGCAGTTTTGAAAC 415
||||||| | |||||| ||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 404 TTAGACTTATAAGGTGTTCTCAAATTACAGACGATGGATTTGTCGAAGCAGTTGTGAAAC 463
Query 416 TTCCACTGCTTGAAGAACTCGAGTTGTCATACTGCTCATTGTCAGGAGTGTCTCTGAAAG 475
||||| |||||||||||||||||||||||||||||||| |||| || |||||| | ||
Sbjct 464 TTCCA---CTTGAAGAACTCGAGTTGTCATACTGCTCATTTTCAGTAGAGTCTCTCAGAG 520
Query 476 TTCTAGGCCAGTCTTGTCCAAATATGAAGACATTGAAGTTAAAGAGGTATCCTCAAAAAG 535
|| ||||||||| |||| |||||||||||| |||||| | || | | |||||||||| |
Sbjct 521 TTGTAGGCCAGTGTTGTTTAAATATGAAGACTTTGAAGCTGAACAAGCATCCTCAAAAGG 580
Query 536 AGAATGACGATGATGCTCTAGCGATTGCTGAAACAATGCCTAAACTTCGCCATCTCCAGC 595
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 581 AGAATGACGATGATGCTCTAGCAATCGCTGAAACAATGCCGAAACTTCGCCATCTCCAGC 640
Query 596 TTTTTGGTAACGGATTATCAGACACCGGCTTAAACGCCATTCTTGACAGTTG-TCTAAAC 654
||| ||| ||||| || ||||||||||| |||||||| |||||||||| ||| || ||||
Sbjct 641 TTTGTGGGAACGGGTTGTCAGACACCGGTTTAAACGCTATTCTTGACAATTGCTC-AAAC 699
Query 655 CTGGAACATCTTGATTTACGCCGGTGTTTCAATGTTAATCTTATTGGGGATCTGCAGAAG 714
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 700 CTGGAACATCTTGATTTACGCCGGTGTTTCAATGTTAACCTTGTTGGGGATTTGCAGAAG 759
Query 715 CGGTGTTCTGAGACG-GTCAAAGTTGTGAGACACCCTAATGACTCGACTCATGATACCGA 773
||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 760 CGGTGTTTTGAGA-GTGTCAAAGTTGTGAGACACCCTAATGACTCGATTCATGATATCGA 818
Query 774 CATTGGTTCATCAGAAGACGAATACCCTTATGGCTTCTCTGATATCGATCTGATGTCAGA 833
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 819 CATTGGTTCATCAGAAGACGAAGACCCTTATGACTTCTCTGATATCGATCTGATGTCAGG 878
Query 834 TGAT-ACTGAGTTTGATGATTACTATGACCTCACAGGTGCTAGTGACTATTCTGACTATG 892
|||| | ||| ||||| | |||||||||| || ||||||||||||||| |||||||||||
Sbjct 879 TGATGA-TGATTTTGAGGGTTACTATGACTTCTCAGGTGCTAGTGACTTTTCTGACTATG 937
Query 893 ACCAGTTTGATTACTATGATGACAT 917
|||||||||||| ||| |||| |||
Sbjct 938 ACCAGTTTGATTTCTA-GATG-CAT 960
> AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:2777903-2778801
REVERSE LENGTH=741
Length=741
Score = 276 bits (149), Expect = 3e-73
Identities = 538/717 (75%), Gaps = 61/717 (9%)
Strand=Plus/Plus
Query 5 CTTCTTCGTCTTTACCTCCGGCGATGGAGGTCGGAGAATCTAGAAACTGGACGGAGCTTC 64
||||||| |||| |||| ||| ||| || |||||| | |||||||||| ||||||| |
Sbjct 14 CTTCTTCCCCTTTCCCTCAGGCTATGAAGAACGGAGAGTATAGAAACTGGGCGGAGCTAC 73
Query 65 CACCGGAACTGACGTCATTGATACTGCACCGTCTTGGCGCGATTGAGATACTGGAAAACG 124
| |||||||||||||||| ||| |||| ||| || || |||||||||||||| ||||||
Sbjct 74 CGCCGGAACTGACGTCATCGATCCTGCTCCGACTCGGTGCGATTGAGATACTTCAAAACG 133
Query 125 CTCAGAAAGTTTGCAGATCGTGGCGTCGCGTTTGTAAAGACCCATCGATGTGGCGTAAAA 184
|||||| ||| |||| ||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 134 CTCAGAGAGTGTGCAAATCGTGGCGACGCGTCTGTCAAGACCCATCGATGTGGCGTAAAA 193
Query 185 TCGACATGCATAACCTCGGAGAT-TTGG-AAGACAT-GG-A-A-TTCAACCT-CGATATC 237
||||||| || || | ||| | |||| || || | || | | || | || ||||
Sbjct 194 TCGACAT-CAGAATCAAGGAAAACTTGGTAA-AC-TCGGTAGAATTGTTT-TACGTTATC 249
Query 238 -A-----TGTG-TCGTCACGCTGTTGATCGT-AGCCAGGGAGGCCTGGTTGAGATCGATA 289
| |||| | ||| ||| ||||||| | |||||||||||| || |||||||| | |
Sbjct 250 GAGCCCCTGTGCT-GTCGCGCCGTTGATC-TCAGCCAGGGAGGCTTGCTTGAGATCAACA 307
Query 290 TATGGT-ATTTCGGT-A-CTGATGGTCTCCTCAATTACATCGCCGATAGGTCGAGTAATC 346
| || | | || ||| | | | || ||||||||||||| ||||| || || |||||||
Sbjct 308 T-TGATTACTT-GGTGAACACTTCGT-TCCTCAATTACATTGCCGACAGATCAAGTAATC 364
Query 347 TGAGAAGCCTTAGACT-GACAAG-GTGCTCTCAA-ATT-ACGGACGATGGACTTGTCGAA 402
||||| | ||| || | | | |||||| || ||| | | | | ||| ||||||||
Sbjct 365 TGAGACGGCTTGGAGTTGTTGACTGTGCTC-CAGTATTGA-GCAGG--GGAGTTGTCGAA 420
Query 403 GCAGTTTTGAAACTTCCACTGCTTGAAGAACTCGAG-TTGTCATACT-GCTCATTG-TCA 459
|||| |||| || ||| ||||||||||||| || || ||||| | |||| |||
Sbjct 421 GCAGCGATGAAGCTCCCATTGCTTGAAGAACTTGATATTA-CATACAAG-TCATCAATCA 478
Query 460 G-GAGT--GTCTCTGAAAGTTCTAGGCCAGTCTTGTCCAAATATGAAGACATTGAAGTTA 516
| || | | | |||||| |||||||||||||||||||| ||| |||||| ||| ||
Sbjct 479 GAGAACAAGAGT-TAAAAGTTGTAGGCCAGTCTTGTCCAAATCTGAGGACATTAAAGCTA 537
Query 517 AA--G-A-GG-T-ATCCTCAAAAAGA-GAATGACGATGATGCTCTAGCGATTGCTGAAAC 569
|| | | || | || | || | | ||| | | ||||||||| || ||||||||
Sbjct 538 AACTGTACGGGTGATGTT-AAGT-GTTG--TGATAAGGTTGCTCTAGCAATCGCTGAAAC 593
Query 570 AATGCCTAAACTTCGCCATCTCCAGCTTTTT-GGTAACGGATTATCAGACACCGGCTTAA 628
|||||| |||||||| ||||||||||| || ||||||||||| || || ||||| |
Sbjct 594 AATGCCCGGTCTTCGCCACCTCCAGCTTTTCAGG-AACGGATTATCCGAGACGGGCTTGA 652
Query 629 ACGCCATTCTTGACAG-TTGTC-TAAACCTGGAACATCTTGATTTACGCCGGTGTTT 683
||||||||||||| || ||||| | | |||| || | || | |||| || ||||||
Sbjct 653 ACGCCATTCTTGA-AGGTTGTCCTCA-CCTGAAAAACCTCGGGTTACACCAGTGTTT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5