BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352456

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G05460.1 | Symbols:  | RNI-like superfamily protein | chr4:2...   113    1e-24


> AT4G05460.1 | Symbols:  | RNI-like superfamily protein | chr4:2760881-2762445 
REVERSE LENGTH=1179
Length=1179

 Score =  113 bits (61),  Expect = 1e-24
 Identities = 187/246 (76%), Gaps = 16/246 (7%)
 Strand=Plus/Plus

Query  75   AAACTGGGCGGATCTTCCGTCGGAGTTGACGTCTTTGATCCTG-ATCCGTCTTAGCGTGG  133
            ||||||| |||| |||||  ||||  |||| ||    |||||| | ||||||| ||| | 
Sbjct  96   AAACTGGACGGAGCTTCCACCGGAACTGACTTCAGCAATCCTGCA-CCGTCTTGGCGCGA  154

Query  134  CTGATATTC-TGAACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGCATCTGTAAAGAA  192
             ||| || | |||| ||||||||||| || |||||| | ||||| ||  | |||||||| 
Sbjct  155  TTGAGATACTTGAA-AACGCTCAGAAAGTTTGCAGATCTTGGCGTCGTGTTTGTAAAGAC  213

Query  193  CCTTCGATGTGGCGGAAAATCGACATG-AGAAGCCTGATCAGAGA-TAGG-GGA-AT-GC  247
            || ||||||||||| ||||| |||||| | || ||   || |||| | ||  || || | 
Sbjct  214  CCATCGATGTGGCGTAAAATTGACATGCATAA-CC---TCGGAGATTTGGACGACATGGA  269

Query  248  TCGAC-CCCTTGGCTATCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGTGGTTTGGTC  306
            |  ||  || | |  ||||||||||||||||||||||||||||||||||| || ||||| 
Sbjct  270  T-TACAACC-TCGAGATCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTT  327

Query  307  GAAATC  312
            || |||
Sbjct  328  GATATC  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5