BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg352456 Length=417 Score E Sequences producing significant alignments: (Bits) Value AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:2... 113 1e-24 > AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:2760881-2762445 REVERSE LENGTH=1179 Length=1179 Score = 113 bits (61), Expect = 1e-24 Identities = 187/246 (76%), Gaps = 16/246 (7%) Strand=Plus/Plus Query 75 AAACTGGGCGGATCTTCCGTCGGAGTTGACGTCTTTGATCCTG-ATCCGTCTTAGCGTGG 133 ||||||| |||| ||||| |||| |||| || |||||| | ||||||| ||| | Sbjct 96 AAACTGGACGGAGCTTCCACCGGAACTGACTTCAGCAATCCTGCA-CCGTCTTGGCGCGA 154 Query 134 CTGATATTC-TGAACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGCATCTGTAAAGAA 192 ||| || | |||| ||||||||||| || |||||| | ||||| || | |||||||| Sbjct 155 TTGAGATACTTGAA-AACGCTCAGAAAGTTTGCAGATCTTGGCGTCGTGTTTGTAAAGAC 213 Query 193 CCTTCGATGTGGCGGAAAATCGACATG-AGAAGCCTGATCAGAGA-TAGG-GGA-AT-GC 247 || ||||||||||| ||||| |||||| | || || || |||| | || || || | Sbjct 214 CCATCGATGTGGCGTAAAATTGACATGCATAA-CC---TCGGAGATTTGGACGACATGGA 269 Query 248 TCGAC-CCCTTGGCTATCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGTGGTTTGGTC 306 | || || | | ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 270 T-TACAACC-TCGAGATCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTT 327 Query 307 GAAATC 312 || ||| Sbjct 328 GATATC 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19755225357 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5